Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1480 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCCCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTATTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACAGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 50.54 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25749442 25750850 - ClG42_06g0148000.10 Clacu06g1480 252128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1480 278 MobiDBLite consensus disorder prediction 75 122 - -
Clacu06g1480 278 MobiDBLite consensus disorder prediction 255 278 - -
Clacu06g1480 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1480 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1480 278 Gene3D WRKY domain 190 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1480 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 267 IPR044810 GO:0003700(InterPro)
Clacu06g1480 278 FunFam WRKY transcription factor 65 187 264 - -
Clacu06g1480 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Clacu06g1480 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1480 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0150 Clacu-Chr5:1412043 Clacu06g1480 Clacu-Chr6:25749442 1.20E-27 dispersed
Clacu05g2853 Clacu-Chr5:35743055 Clacu06g1480 Clacu-Chr6:25749442 1.80E-69 dispersed
Clacu06g1480 Clacu-Chr6:25749442 Clacu07g0061 Clacu-Chr7:970766 3.40E-39 dispersed
Clacu06g1480 Clacu-Chr6:25749442 Clacu05g2214 Clacu-Chr5:30691928 4.50E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47919 PF03106 WRKY 1.20E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1480 - - - 0.0