Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1491 ATGGCAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACGACGCCAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCATCAGTACACCAACAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCTAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 840 38.93 MADHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQQLSFTLIPKEELGINNNDDDDANNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHHQYTNNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25842700 25844280 + ClG42_06g0149100.10 Clacu06g1491 252139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1491 279 Gene3D - 137 207 - -
Clacu06g1491 279 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu06g1491 279 Coils Coil 201 235 - -
Clacu06g1491 279 MobiDBLite consensus disorder prediction 116 139 - -
Clacu06g1491 279 CDD homeodomain 146 203 IPR001356 GO:0003677(InterPro)
Clacu06g1491 279 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677(InterPro)
Clacu06g1491 279 SMART halz 202 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1491 279 SMART HOX_1 144 206 IPR001356 GO:0003677(InterPro)
Clacu06g1491 279 Pfam Homeodomain 146 200 IPR001356 GO:0003677(InterPro)
Clacu06g1491 279 FunFam Homeobox-leucine zipper protein 18 131 207 - -
Clacu06g1491 279 Pfam Homeobox associated leucine zipper 202 235 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1491 279 MobiDBLite consensus disorder prediction 108 145 - -
Clacu06g1491 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 267 IPR050762 -
Clacu06g1491 279 SUPERFAMILY Homeodomain-like 134 203 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1491 Clacu-Chr6:25842700 Clacu10g0841 Clacu-Chr10:16316330 4.10E-40 dispersed
Clacu06g1491 Clacu-Chr6:25842700 Clacu09g0379 Clacu-Chr9:3340058 4.80E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47920 PF00046 Homeodomain 1.10E-15 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1491 K09338 - csv:101203427 379.407