Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1493 ATGCCTCGCCGAATACTTCAAGGAAACTCTGAAGATCAGATGAAGAGCTCTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTTCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAAAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTCTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGATCTGCACTCACCGAACTAGTGGATCCAAGGATGAAGGACGGTGGATATGTGGAGAAGAATGTAGCACACGCAATTCATGTTGCTTTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATCGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1218 40.97 MPRRILQGNSEDQMKSSSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLKKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALTELVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25861916 25863940 + ClG42_06g0149300.10 Clacu06g1493 252141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1493 405 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
Clacu06g1493 405 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Clacu06g1493 405 FunFam Cysteine-rich receptor-like protein kinase 10 59 170 - -
Clacu06g1493 405 Pfam Protein kinase domain 97 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1493 405 FunFam Cysteine-rich receptor-like protein kinase 2 171 373 - -
Clacu06g1493 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1493 405 SMART serkin_6 94 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1493 405 CDD STKc_IRAK 100 366 - -
Clacu06g1493 405 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Clacu06g1493 405 ProSiteProfiles Protein kinase domain profile. 94 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1493 405 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 388 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1493 Clacu-Chr6:25861916 Clacu09g2282 Clacu-Chr9:37566657 9.00E-89 dispersed
Clacu06g1493 Clacu-Chr6:25861916 Clacu05g2748 Clacu-Chr5:34942248 4.00E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73658 PF00069 Pkinase 9.30E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1493 - - - 0.0