Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1495 ATGTACATTCTTATAACTGTTAGATCCACGATATCGGTTGGCTCCGACCTGATCCGACCCTCGAAAAGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCGCCGTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTCGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAGGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCACCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 1344 52.83 MYILITVRSTISVGSDLIRPSKSPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRGSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25870453 25872220 - ClG42_06g0149500.10 Clacu06g1495 252143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1495 447 ProSiteProfiles Zinc finger RING-type profile. 210 252 IPR001841 -
Clacu06g1495 447 FunFam RING-H2 finger protein ATL43 185 259 - -
Clacu06g1495 447 Pfam Ring finger domain 209 252 IPR001841 -
Clacu06g1495 447 SMART ring_2 210 251 IPR001841 -
Clacu06g1495 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 259 IPR013083 -
Clacu06g1495 447 CDD RING-H2_EL5-like 209 252 - -
Clacu06g1495 447 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 107 414 - -
Clacu06g1495 447 MobiDBLite consensus disorder prediction 292 329 - -
Clacu06g1495 447 MobiDBLite consensus disorder prediction 18 38 - -
Clacu06g1495 447 MobiDBLite consensus disorder prediction 308 329 - -
Clacu06g1495 447 SUPERFAMILY RING/U-box 190 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0962 Clacu-Chr6:13190465 Clacu06g1495 Clacu-Chr6:25870453 4.40E-41 dispersed
Clacu06g0963 Clacu-Chr6:13193006 Clacu06g1495 Clacu-Chr6:25870453 7.80E-35 dispersed
Clacu06g1495 Clacu-Chr6:25870453 Clacu08g1292 Clacu-Chr8:22859272 3.00E-21 dispersed
Clacu06g1495 Clacu-Chr6:25870453 Clacu06g1388 Clacu-Chr6:24796210 1.50E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1495 K19041 - csv:101203916 625.55