Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1500 ATGAAGAACTTACCTCTCTACATCCTCCGATCTCCTCCGCGTTCTCTTCTCCGGTTGCCGCTACCGGTCGCCAGCCCCTTCTTGTCTCACCTCTCCTATTTCATAACCATCTCTCTCTTAGGCTTTGGAGCTCTAAAGCTCACCAAAACTAGAAACTCCTCCTCCCCAAATGACCTCAACATTTTCTTCACCTCCGTCTCTGCCGTCTCCGTTTCAAGCATGTCTGTCATTGAAATGGAAGTTTTTTCCAATTTCCAACTCCTCATCATCACCACCCTCATGTTCCTCGGCGGCGAAGTCTTCGTCTCTGCCGTCGGGTTCCAACTCTCTCGCCGGTTCAAATACTTGAACGAGAAAAACCAAGTCGATTCGGCTCGGTCCATTGAGATGGAAAGTGGGACGTCGTCATCAACGACGGCCACCATTGATGAGTTGAGTATCTCAAAATCATGTTCAAAGCTTTTGGGTCGTACGATAATTGGATATCTTTTGACGACAAATGGTGTTGGTTCTTGTTTAATCTTCATTTACATCATCACGATCCCCCATGCAAAGCAAGTGCTTGAAAGCAAAGGCATCAACTTCCTTACTTTTTCAATTTTTAGTACAGTTTCTACTTTTACCAACTGTGGCTTCATACCTACTAATGAAAATATGATCGCTTTCAAGAACAACTCTGGCCTTTTGCTCATACTCATCTCGCAGGTGTTGTTGGGAGGTTGTTTATATCCGGTGGGTCTCCGGTTGGCAATAATGGCGGCGGCGAAGGTGACGGGGAAGAAGGAATGGAGATACATATTGAAGAACTACTCAGAGATGGGGTATTCTCATCTCTTGTCGGGGCTCCGGTGTGGATTTCTGGCCGTGACGGCGGTGGGATTCATAATTTTGCAATTGATTATCTTTTGCTCATTGGAATGGAACAACTCCGCCGGAATTTGGGATGGCCTGAATCCCTACCAGAAGTTTGTGGGATCACTTTTTCAGGTGACAAACTCAAGACATGCCGGAGAGTCGGTGGTGGATATCTCGGTCATCTCGCCCGCGATCTTGGTAGTTTTTGTTGTCATGATGTATCTCCCACCATACACAACCTTTTTACCCATAAGGAACAAAGAGATAGCTTCAATGTCACATGGGAAGGACAAAAGACAACACTTAGTGGAATTATTCACATTCTCACAGCTCTCCTATTTGGCCATTTTTATCATTCTCATATGCATCACAGAGAAAGAAAAGCTAAGAGATGATCCCCTTAACTTTACCGTTCTCAACATCACCCTTGAAGTGATCAGTGCATATGGAAATGTTGGGTTCTCAAGTGGGTATAGCTGCAAAAGACAAGTAAAAGTTGATAGCTCTTGCAAAGATGCATGGTATGGATTTGCTGGAAGATGGAGTCCAAAGGGAAAATTCATTCTAATTCTTGTCATGATCTTTGGAAGAATGAAAAGTTTTAGTATGCATAGTGGTAGAGCTTGGAAATTATCATGA 1494 44.11 MKNLPLYILRSPPRSLLRLPLPVASPFLSHLSYFITISLLGFGALKLTKTRNSSSPNDLNIFFTSVSAVSVSSMSVIEMEVFSNFQLLIITTLMFLGGEVFVSAVGFQLSRRFKYLNEKNQVDSARSIEMESGTSSSTTATIDELSISKSCSKLLGRTIIGYLLTTNGVGSCLIFIYIITIPHAKQVLESKGINFLTFSIFSTVSTFTNCGFIPTNENMIAFKNNSGLLLILISQVLLGGCLYPVGLRLAIMAAAKVTGKKEWRYILKNYSEMGYSHLLSGLRCGFLAVTAVGFIILQLIIFCSLEWNNSAGIWDGLNPYQKFVGSLFQVTNSRHAGESVVDISVISPAILVVFVVMMYLPPYTTFLPIRNKEIASMSHGKDKRQHLVELFTFSQLSYLAIFIILICITEKEKLRDDPLNFTVLNITLEVISAYGNVGFSSGYSCKRQVKVDSSCKDAWYGFAGRWSPKGKFILILVMIFGRMKSFSMHSGRAWKLS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25933570 25938939 + ClG42_06g0150000.10 Clacu06g1500 252148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1500 497 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 21 494 IPR051143 GO:0005886(PANTHER)|GO:0008324(PANTHER)
Clacu06g1500 497 Pfam Cation transport protein 46 488 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1498 Clacu-Chr6:25885280 Clacu06g1500 Clacu-Chr6:25933570 2.10E-109 dispersed
Clacu06g1499 Clacu-Chr6:25893497 Clacu06g1500 Clacu-Chr6:25933570 1.90E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1500 K24976 - csv:101206239 817.764