Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1527 GATTACAAGATACACAATCTTGTTGATGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGATGGTCAGCTCTTGACAGTAACCTCTGGAAGGGCAGCTGCAATTTCTAGAGCTCGACCTTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAGAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCGCTGGAAGCTATTTCCCTGGGTGTTAAAGCTGGAATTCACCCCTGGATAATCTATGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATTATGTTCCCCACTTGTTAAAGGGTGATATTAGACCTGAGTTGTTGAGAAGTTTGGTTCAAGCTATGGGGATTGTCATGGATAAGGCCAAGTCGCACACTTTTCCTCTTCCTCTCCTAGCAGTTACTCATCAGCAACTTATGCTGGGTTCTTCCCATGGCTATGGAGATGAGGATGGCTTGTTAGAACAGGCGTGGAAAAGTGCATATGGAGTAAGTATTTCAAATGCAGCTAATACAGAAGTTTACAGCCCTGAGCAACTAGCCAATGAAATAACTTCTAAATCAAGTTCTGTTAATCGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCACCTTATCAGATCAGCTTTTTGTGTGACTGGTTATGATGTGTTTAAACCAACCCTAACTAAATTCACTGATGCTGGTGGCTTGATTGGAAACTCGCCTGCAGAAGTTAGTAAAGATGTTGAAGTGCTCGTAATTATGGTGACAAATGAAGCACAAGTGGAGAGCGTTCTGTATGGGGAAGCTGGGGCTATCTCTGCCCTTCCATATGGAGCTTCGATTATTCTATCATCTACTGTTTCTCCTGGATATGTGCGGCAACTAGAACAACGCTTGGGAAATGAGGGCAAAAATTTGAAATTGGTTGATGCTCCTGTTTCTGGTGGTGTTCAAAGGGCCTCAAAGGGAGCCCTTACGATAATGGCCTCGGGGACAAATGAAGCTCTTAGGAGCGCTGGTTCAGTCCTCTCAGCCTTAAGTGAGAAGCTTTATGTAATTAAAGGAGTCTGCGGGGCAGGAAGTGGTGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGAGCTCGACTTGGTCTCAATACTCGAATTTTATTTGACGTCATCGTAAATAGTCAGGGAACGTCCTGGATGTTTGAAAACCGAGTTCCGCATATGCTGGACGATGATTATACACCATACTCTGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCCGTGACTGCACATCAATTGTTTCTGGCAGGTTCTGCTGCGGGCTGGGGTCGTCAAGATGATGCTGGAGTAGTAAAGGTTTATGAGACGCTTACAGGTGTCAAGGTTAAAGGAAAGCCTCCCACTCTTAAGAAAGAAGCTGTATTGAGGTCTCTTCCACCTGAATGGCCGCAAGATGTGATTGCTGATATTCAACAACTGAATGAAAGGAATTCAAAGATTTTGGTTGTGCTGGACGATGATCCAACGGGAACCCAAACTGTTCATGATATTGATGTTTTAACTGAATGGTCCCTTGATTCACTTATTGAGCAATTTCGTAAAAAGCCGAAATGCTTTTTTATATTGACCAACTCAAGGTCACTGAGCTCTGAAAAGGCTGGGGCATTAGTTAAACAAATCTGCACTAATTTACGTGCTGCATCTGAGTGTGTCAAGCATAGTGACTACATGGTAGTTTTGAGAGGTGATTCAACCTTACGAGGTCATTTTCCTGAGGAAGCCGATGCTGCTATGTCAGTGTTAGGTGTAGTGGATGCATGGATCATCTGCCCGTTCTTTTTCCAAGGAGGCCGTTATACTGTTGACGATATACACTATGTTGCAGATTCTGATGAGCTTATTCCTGCAGGGGACACTGAGTTCGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGACGCATACAAGCTGGCACTGTTACCTCCATTTCTATTCAACTTTTAAGAAAGGGTGGCCCAGATGCTGTTTGCGAGCACCTATGCAGCTTAGAGAAGGGAATGACATGTATAGTTAATGCCGCTAGTGAAAGGGATATGGCAGTCTTTGCAGCTGGAATGATTAAGGCAGAAATGAAGGGCAAGAATTTCTTATGCCGAACTGCTGCCAGTTTTGTATCAGCCAGGGTTGGGATCACTCCAATAGCCCCTCTTTTGCCAAAGGATGTTGGAATTGATAAAGAGAGAAATGGTGGTCTTATTATTGTGGGTTCATATGTTCCAAAAACTACTAAACAGGTTCAAGAGTTGAAGTTGCGATGTGGCCCATTTTTAAGATGTATTGAGGTTTCTGCTGCTAAACTTTCCATGAGTACAGAGGAAGAGAGGGAGGAGGAAATTAGAAAAGCAGCTATGTTTGCTGATATTTATCTCAGGGCTCGTAAAGATACTCTGATTATGACTAGTAGAGAACTTATCAGGGGAAAAAGTCCCCTGGAGAGTTTAGAAATCAACATCAAAGTAAGTGCTGCGCTAGTGGAAATAGTTCAACAGATTACTACAAAACCTCGTTACATCCTTGCAAAGGGTGGAATCACCTCATCAGACATTGCTACAAAGGCTCTTGGAGCAAAATGTGCTAGGATAATTGGACAGGCCTTTTCTGGGGTTCCCTTGTGGCAACTAGGCCATGAAAGTAGACATCCTGGAGTTCCCTACATTGTTTTCCCAGGTAATGTTGGAAGCAGTGAAGCACTAGCAGAAGTAGTCAGTACTTGGGCTCTTCCTGCCAGACTTTCCTCCTCAAAAGAGATTCTTCTTAGTGCAGAACAAGGTGGGTATGCAGTGGGAGCTTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACACAGTCCTGCCATATTACAGATCCATCCAGGTGCCTTAAAGCAAGGAGGGCTCTCTTTGGTTTCGTGCTGTATTGCTGCTGCTGAACGAGCCAGTGTACCAATTACTGTTCACTTTGATCACGGAAATTCAATGCAAGATCTGTTAGAAGCTGTTGAATTGGGATTTGATTCAGTAATGGCAGATGGTTCACATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCAATCAAAGAACATGCTAGTGGAAGCTGAACTTGGAAGGTTATCAGGAACAGAAGATGACTTGACCGTCGAAGATTATGAAGCAAGGTTGACCGATGTTTCGCAGGCTCAACAGTTTATTGAGGAGACTGGCATAGATGCCCTGGCAGTGTGCATTGGTAATGTCCATGGAAAATATCCAGCAGGTGGCCCGAATCTCAGACTCGATCTGCTCAAGGACTTGCATGCTTTGACCTCAAAAAAAGAAGTCTTCCTGGTGCTGCACGGAGCTTCAGGTTTGCCTGAGAACCTCATAAAGGCTTGCATCGAGAATGGAGTGAGAAAGTTCAACGTAAATACTGAGGTTCGCAAAGCATACTTGGATTCGCTGAATAACCCCAGCAAAGATTTAGTCCATGTGATGGAATCAGCAAAAGAATCCATGAAAGCTGTGATTGCAGAGAAGATGCATCTATTTGGCTCTGCAGGAAAAGCATTCTGA 3789 43.34 DYKIHNLVDAYVFKGVSEALDGQLLTVTSGRAAAISRARPFLSAMCGKLFIFEGEVDAGSRTNMVIELLKGIHFVASLEAISLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDIRPELLRSLVQAMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDEDGLLEQAWKSAYGVSISNAANTEVYSPEQLANEITSKSSSVNRVGFIGLGAMGFGMATHLIRSAFCVTGYDVFKPTLTKFTDAGGLIGNSPAEVSKDVEVLVIMVTNEAQVESVLYGEAGAISALPYGASIILSSTVSPGYVRQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTNEALRSAGSVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFDVIVNSQGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEAVLRSLPPEWPQDVIADIQQLNERNSKILVVLDDDPTGTQTVHDIDVLTEWSLDSLIEQFRKKPKCFFILTNSRSLSSEKAGALVKQICTNLRAASECVKHSDYMVVLRGDSTLRGHFPEEADAAMSVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVTSISIQLLRKGGPDAVCEHLCSLEKGMTCIVNAASERDMAVFAAGMIKAEMKGKNFLCRTAASFVSARVGITPIAPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGPFLRCIEVSAAKLSMSTEEEREEEIRKAAMFADIYLRARKDTLIMTSRELIRGKSPLESLEINIKVSAALVEIVQQITTKPRYILAKGGITSSDIATKALGAKCARIIGQAFSGVPLWQLGHESRHPGVPYIVFPGNVGSSEALAEVVSTWALPARLSSSKEILLSAEQGGYAVGAFNVYNLEGVQAVVAAAEEQHSPAILQIHPGALKQGGLSLVSCCIAAAERASVPITVHFDHGNSMQDLLEAVELGFDSVMADGSHLPFKENIAYTKFISSLAQSKNMLVEAELGRLSGTEDDLTVEDYEARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPAGGPNLRLDLLKDLHALTSKKEVFLVLHGASGLPENLIKACIENGVRKFNVNTEVRKAYLDSLNNPSKDLVHVMESAKESMKAVIAEKMHLFGSAGKAF 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26191131 26209007 + ClG42_06g0152700.10 Clacu06g1527 252175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1527 1262 Gene3D - 58 173 IPR013328 -
Clacu06g1527 1262 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 210 368 IPR006115 GO:0050661(InterPro)
Clacu06g1527 1262 Gene3D - 794 976 IPR042213 -
Clacu06g1527 1262 SUPERFAMILY Aldolase 985 1261 - -
Clacu06g1527 1262 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 58 168 IPR008927 -
Clacu06g1527 1262 Gene3D - 203 371 - -
Clacu06g1527 1262 NCBIfam ketose-bisphosphate aldolase 984 1261 IPR000771 GO:0005975(InterPro)|GO:0008270(InterPro)|GO:0016832(InterPro)
Clacu06g1527 1262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 210 373 IPR036291 -
Clacu06g1527 1262 Pfam Sugar-binding N-terminal domain 542 779 IPR010737 -
Clacu06g1527 1262 Gene3D - 3 52 - -
Clacu06g1527 1262 Gene3D Aldolase class I 979 1262 IPR013785 -
Clacu06g1527 1262 Pfam Nucleotide-binding C-terminal domain 804 970 IPR031475 -
Clacu06g1527 1262 Gene3D - 372 504 IPR013328 -
Clacu06g1527 1262 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 375 502 IPR008927 -
Clacu06g1527 1262 Pfam Fructose-bisphosphate aldolase class-II 985 1260 IPR000771 GO:0005975(InterPro)|GO:0008270(InterPro)|GO:0016832(InterPro)
Clacu06g1527 1262 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 213 226 IPR002204 GO:0016491(InterPro)
Clacu06g1527 1262 Gene3D - 541 781 IPR037051 -
Clacu06g1527 1262 CDD TBP_aldolase_IIB 987 1259 IPR000771 GO:0005975(InterPro)|GO:0008270(InterPro)|GO:0016832(InterPro)
Clacu06g1527 1262 SUPERFAMILY YgbK-like 542 974 - -
Clacu06g1527 1262 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 58 168 IPR029154 GO:0051287(InterPro)
Clacu06g1527 1262 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 375 495 IPR029154 GO:0051287(InterPro)
Clacu06g1527 1262 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 195 1261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1527 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34