Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1530 ATGGCTAAACCCTTTTCGTTTCCGTCAAAATCCACCGAACACACGGTCATGGCAGCTCCAAAGTTCTTGCAGTTCGGCACTGCAATCTCCCGAACTACACCCAGAGCTCTATCGCCCCTCCTCTTCCCCAGAAGACTCCCGCCGAAGCTCATATCCTTCATCAGGTGCAGTTCTTCTACCGCGCTTGATGCCGCCGGCAGCAGCGGCGCTGATGCTCCCCAACAACACTCCACCCTCACTCACCACCCATGGCCTGAATGGGTTTCCTTCGTCGATGGCCTGAGGACCAAGGGTTACTTGATCGAACCTCCTTCAGAAGATGCAACTACGCCATCTGGGACTGATTACAGCGACATGAACGTGTTGAAGGATGCTTGCGTCAGCTTTGCGCGCGATCGATACGATATTTTCAAATCATTGTCCACAGATGATATTCAAACGATTGTGAAGGATGGATGCCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAAAGGTTGAGGGCTTATGTGCAACTAGATGAAGGGGACGTTTGTAGTACCTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGATCCCCTTGTTTTGTCTGGAGGGAACAAACCTTCGGGTAGAGAGCATGTCGAAGTCTCTGTGAGGAAATTACTTTCCGAGCTGTTGGAACTAAGTGAAAAACCCCTTGATGCAGCAGCAATGAAGAAGGATACAAAATCTCCCCAAAGAAAAGAAAAACTATCAAAATTTACAAATGGTGCCTCAACTCAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTACGAAATGCAACTTTTTGAATTTTGCTAGAAACATAAGATGTTTAAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTTCAAATGATATTGAAATGAAGAACGGAGATTGGATCTGTCCAGAATGCAACTTTATGAACTTCTCAAAAAATATTCGCTGCTTAAAGTGCAAAACAGAGGGGCCGAGGAAGATTAATGACAAAGAAATCGAAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTACATTCATGAACTTTGCCAATAACATGAAATGTTTGCGTTGCCGAGAACATCGTCCGAGGAGAGATATGAATCCAGGAGAATGGGAATGTCCTTCGTGTGATTTTTTGAATTACAGAGGGAACATGAGCTGCCGCAAGTGCAATGTTGAGCGTCCTAAACAAGAAATAAGTGCCGAGTACACAGAGCAACTATGGAAGTCACCCAGGGAAAGATGA 1332 44.89 MAKPFSFPSKSTEHTVMAAPKFLQFGTAISRTTPRALSPLLFPRRLPPKLISFIRCSSSTALDAAGSSGADAPQQHSTLTHHPWPEWVSFVDGLRTKGYLIEPPSEDATTPSGTDYSDMNVLKDACVSFARDRYDIFKSLSTDDIQTIVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCDRAYVILKETEATARTVDVARLLLTYALDPLVLSGGNKPSGREHVEVSVRKLLSELLELSEKPLDAAAMKKDTKSPQRKEKLSKFTNGASTQDVEMKRGDWMCTKCNFLNFARNIRCLKCNEDGPKRVRSNDIEMKNGDWICPECNFMNFSKNIRCLKCKTEGPRKINDKEIEMKKGDWICPQCTFMNFANNMKCLRCREHRPRRDMNPGEWECPSCDFLNYRGNMSCRKCNVERPKQEISAEYTEQLWKSPRER 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26221035 26225130 - ClG42_06g0153000.10 Clacu06g1530 252178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1530 443 Pfam Zn-finger in Ran binding protein and others 324 352 IPR001876 -
Clacu06g1530 443 Pfam Zn-finger in Ran binding protein and others 286 308 IPR001876 -
Clacu06g1530 443 Pfam Zn-finger in Ran binding protein and others 363 386 IPR001876 -
Clacu06g1530 443 ProSiteProfiles Zinc finger RanBP2 type profile. 396 425 IPR001876 -
Clacu06g1530 443 Gene3D - 316 354 - -
Clacu06g1530 443 Gene3D - 355 392 - -
Clacu06g1530 443 Gene3D - 393 427 - -
Clacu06g1530 443 Gene3D - 276 315 - -
Clacu06g1530 443 SMART zf_4 287 311 IPR001876 -
Clacu06g1530 443 SMART zf_4 326 350 IPR001876 -
Clacu06g1530 443 SMART zf_4 365 389 IPR001876 -
Clacu06g1530 443 SMART zf_4 398 422 IPR001876 -
Clacu06g1530 443 SUPERFAMILY Ran binding protein zinc finger-like 355 392 IPR036443 -
Clacu06g1530 443 PANTHER ZINC FINGER PROTEIN 312 352 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Clacu06g1530 443 SUPERFAMILY Ran binding protein zinc finger-like 277 313 IPR036443 -
Clacu06g1530 443 ProSitePatterns Zinc finger RanBP2-type signature. 367 386 IPR001876 -
Clacu06g1530 443 ProSiteProfiles Zinc finger RanBP2 type profile. 285 314 IPR001876 -
Clacu06g1530 443 SUPERFAMILY Ran binding protein zinc finger-like 394 426 IPR036443 -
Clacu06g1530 443 ProSitePatterns Zinc finger RanBP2-type signature. 400 419 IPR001876 -
Clacu06g1530 443 ProSiteProfiles Zinc finger RanBP2 type profile. 324 353 IPR001876 -
Clacu06g1530 443 ProSiteProfiles Zinc finger RanBP2 type profile. 363 392 IPR001876 -
Clacu06g1530 443 SUPERFAMILY Ran binding protein zinc finger-like 317 352 IPR036443 -
Clacu06g1530 443 MobiDBLite consensus disorder prediction 255 274 - -
Clacu06g1530 443 MobiDBLite consensus disorder prediction 255 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1530 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0651 Clacu-Chr1:6960139 Clacu06g1530 Clacu-Chr6:26221035 2.20E-45 dispersed
Clacu02g1602 Clacu-Chr2:29401609 Clacu06g1530 Clacu-Chr6:26221035 1.40E-43 dispersed
Clacu06g1530 Clacu-Chr6:26221035 Clacu10g1688 Clacu-Chr10:30337115 8.50E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37