Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1534 ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTTAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCATCAAGATGGGAAAGCAAAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTGTATGGAATGAAGATCTAACTCTTTCTATCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACTATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA 543 43.46 MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPVWNEDLTLSISDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26251364 26253631 + ClG42_06g0153400.10 Clacu06g1534 252182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1534 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Clacu06g1534 180 CDD C2_ArfGAP 21 164 - -
Clacu06g1534 180 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
Clacu06g1534 180 Pfam C2 domain 22 109 IPR000008 -
Clacu06g1534 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Clacu06g1534 180 SMART C2_3c 23 118 IPR000008 -
Clacu06g1534 180 Gene3D C2 domain 18 179 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1185 Clacu-Chr1:17997064 Clacu06g1534 Clacu-Chr6:26251364 8.60E-11 dispersed
Clacu01g2594 Clacu-Chr1:36212717 Clacu06g1534 Clacu-Chr6:26251364 1.00E-34 dispersed
Clacu06g1534 Clacu-Chr6:26251364 Clacu08g1584 Clacu-Chr8:25642660 1.70E-10 dispersed
Clacu01g1155 Clacu-Chr1:17204857 Clacu06g1534 Clacu-Chr6:26251364 1.50E-33 transposed
Clacu05g1278 Clacu-Chr5:12650465 Clacu06g1534 Clacu-Chr6:26251364 1.40E-67 transposed
Clacu07g0610 Clacu-Chr7:9628216 Clacu06g1534 Clacu-Chr6:26251364 1.70E-49 transposed
Clacu04g1115 Clacu-Chr4:25401543 Clacu06g1534 Clacu-Chr6:26251364 1.90E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1534 - - - 0.0