Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1538 ATGTGGACGTTGGGTTACGATGACAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCTTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTGTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCATCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGAAGAGACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTACCATCGAATCCAGCAATGGAGACCGACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAATGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCCGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 978 44.99 MWTLGYDDNGGEFCFSEAFNGGRKLRPLVPRPLPSFHANGANFSSQYYHLGNHLNEDNKRGLLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPSSIISSTLLSKEWAETQRKTKVVELEEEEEEETRRESVEREETWNYNNILNCQLINPTRKTQHLNSTIESSNGDRRHNVVDNNNDDEESKMMTLQLFPLRSTKFYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26300750 26304744 - ClG42_06g0153800.10 Clacu06g1538 252186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1538 325 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Clacu06g1538 325 Gene3D - 79 147 - -
Clacu06g1538 325 FunFam WUSCHEL-related homeobox 4 79 146 - -
Clacu06g1538 325 MobiDBLite consensus disorder prediction 284 299 - -
Clacu06g1538 325 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Clacu06g1538 325 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 320 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Clacu06g1538 325 MobiDBLite consensus disorder prediction 284 308 - -
Clacu06g1538 325 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Clacu06g1538 325 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Clacu06g1538 325 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Clacu06g1538 325 Coils Coil 198 218 - -
Clacu06g1538 325 MobiDBLite consensus disorder prediction 243 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1538 Clacu-Chr6:26300750 Clacu08g1770 Clacu-Chr8:27124249 6.90E-23 dispersed
Clacu01g2088 Clacu-Chr1:32579382 Clacu06g1538 Clacu-Chr6:26300750 2.90E-23 transposed
Clacu11g0781 Clacu-Chr11:7645496 Clacu06g1538 Clacu-Chr6:26300750 8.00E-22 transposed
Clacu04g1119 Clacu-Chr4:25462212 Clacu06g1538 Clacu-Chr6:26300750 2.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47921 PF00046 Homeodomain 2.20E-19 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1538 - - - 0.0