Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1541 ATGGCGGATTCGTTGGACGAAGAGTGCGATTATCTGTTCAAGGCGGTTCTGACGGGCGATTCCGGCGTCGGAAAATCCAATCTCCTCTCTCGTTTTGCCAAAAACGAATTCCGATTCGACTCTAAACCGACGATCGGCGTCGAGTTTGCTTACCGGAATATTAAGGTCGCCGATAAGCTCATCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCTTATTATCGAGGAGCATTGGGAGCGTTGCTTGTGTACGACATAACTCGGGTGGCTACATTTGATAACGTGAAGAAGTGGTTGCGAGAGTTGAGAGAGTTGGGAAATTCGGAGATGGTGATCATTCTGGTTGGAAACAAATGTGATTTGGATGAATCTCGAGAAGTGGAAGAGGAAGAAGCACGTGGTTTGGCAGAGTTAGAAGGCTTATTTTTCATGGAGACTTCTGCTAAGGATAATGTGAATGTAGAAGAGGCATTTCTTGGAATGGTTCGTAGGATCCATGCTATTGCATCCCAAAACACCTTGAATTTGCATAAACATATTGAAAAGCTTGTTGCTTTTCCAAATGGGAAAGAGATTCCTTCTCGGCTTCCTCTCTCCCCTCTCTTCCCTATCGTCCTTCTCGTTCCGATTCTCTGCAACTGCAATTCACTGCGTTTCTCCTCTGATTTCAATTCCTCGACGACGAAGCTGGATCGTGGATTTGAATCATGGCTAATTGGATCTCCTCCAAGCTTAAAGCGGCCGAGAGCATTCTCCAGCAGATTCGAAATTAGGCTTCTGTTCTGGTTTTTGGAGAATCGAGCTGCGGATTGTTGTGTTGAGAGTATCGATCAGCAAGCGGCGGAGTCACTTAAAAAGGGTGAAAGGCCTCCAGCTCTGGATAATTTGGAAGCCGCTGGAAGAACTGGAGAAAACTTGCCTTTGAAGGATCAACTCAAGAAGAAGAAGAACCAAGTAGATAACGATTATCATGGAAAATTGCGAAGTGATCTAAGTTTGAATGTAAGCAGAAGCCAGGATAATGTGATTTCTGCCGCATCAAAACGCTCGCCGTCGTCAAAATCACCTACACTAACGGACAGTGACTGGACGGAACTGCTCGGTACACCTAATCAACCTTCAACTTCGGCTGCCTCCCGCAGCAATGGAGCATCTTCAATTCGTGGGGCGAAGAGAGAAAGTCGCAGACCAAGCAATGCAGGTTCAAATATGTCGGTGCTGGATTTCAAGAAAACTCAGAACAACGCTAATAGCAACAAGTCCGTTGGGGAAAAAAAGAAATTAAACAGGAAGGCAAGTGATGTGGACGAATCTAATATTTCAGTTTTGTTGGGGTCAAATTCAAGAGTTGATCTGAAAAATGACAAAAATGTTACGCATTCTGAAGGTCAAGAATTGGACAAGAAAGAGGCTGGAGGCGATATTTTAGTTGATGCAAAAAGTGTAGAAAAAAGGGAAATTGGTGGGAATTTTGATTCCAAGGGTTTTTCTTCAGAGGATTCTGTGCTGGCAATAAAAAATGGTCAATCCTCAGAAACAGTGCCGGATACAGATCAAACTAAAAGGATATCTGATACGAATACCATTGTGAAAGATGCTCGAAGTCATCGAGAAAGTGGTGTTTCTGGGAAATATAAATCGGATGAAGTTTCTCATAGTTCTATATCTGATGATGTGAGAAAAGAGTGGACAGGCTCTTCAACTAGTGATGGGAGTTCTGGTTCAGATTCTGACTCAGGTTCAGCTTCTGATTCTGAAATTGAAAGTGAGAGGGAAGAAATAAGAAGGAGGAGGCAGAAAATTCTGGCTGAGAAAGCAGCTGCCAAAGCCATGGAGGCTATCAAAGAACAGGAAGATTTGGTGGCTAGACTGGAAGGGGAGAAGCAGAGCCTAGAAAAGATACTGGAGGATCGAGCAAGAAAGCAAGCAGAAGAGGCTTCAGAGCTGCAGACATCTATGATGGAAATAATGGAGGCTGTTGAGCTTGAGAAACAGAAACACAATGAAACACGTCGAGAAGCCCTTGCAATAATGGCCAAGCTTGAGACTGAAAATGCCGATCTTGCAAGAACCCTTGCTTCTGTACAATGGAATCTTGAGTTAGAGGGTAATCGGGTTGCTGGACTTCGACAGCAGATCGAGTTGAAAGAAACAACTCATGAAGAACTAAGGAGGAGGATCGCAAGCTCTCATCAAGCTGGAACATCAACAAAACCATTGGCTTTTAAAGGAATTGAATTTGAATTGGAGATTCTTGAGGCAGAGCACTCTCTCATTGCTGATAAAGTGCTCCAATTGCAGGAGAAGGGGAAAAAGTTGGAAGAAAACATAGAGTTGATGAGAAAAGAGATGGAGGAACCAACTGAAGTTGAAGTTGAATTGAAGAGAAGGCTTGGCCAGATGACTGACCATTTAATTCAGAAGCAAGCTCAGGTGGAGGCACTTTCTTCAGAAAGGGCAACCCTTCTCTTCAGAATTGAGGCTGTAATGAGGCAGCTAGAAGAAAGCAAATCAATGGTGAATATGAATGACATTTCGAGCACCTCATCAATAGACTTGGAGTCCGCAAAATGGGAACTTTCAGGTTCAAAACTTAGACCAATGTTAGAAGGCAAGATCGACTCAGGCAAGAAACACCTAGGATCATTGATCCAGCAGCTAGATGCAATATATGTAGCAGGCATGGTGTTTATAAGGAGAAACCCTACAGCTAAATTGTGGTCAGTAGTTTACCTTGTATTCCTTCACTTATGGGTACTTTATATTCTCATGTCACATTCTCAGGTAGACCCACAGACTAAGTCTGGTGCTGTTATTTCCTTGGAAAACATCAATACCTCTTTAAACATGTGA 2877 43.38 MADSLDEECDYLFKAVLTGDSGVGKSNLLSRFAKNEFRFDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNVKKWLRELRELGNSEMVIILVGNKCDLDESREVEEEEARGLAELEGLFFMETSAKDNVNVEEAFLGMVRRIHAIASQNTLNLHKHIEKLVAFPNGKEIPSRLPLSPLFPIVLLVPILCNCNSLRFSSDFNSSTTKLDRGFESWLIGSPPSLKRPRAFSSRFEIRLLFWFLENRAADCCVESIDQQAAESLKKGERPPALDNLEAAGRTGENLPLKDQLKKKKNQVDNDYHGKLRSDLSLNVSRSQDNVISAASKRSPSSKSPTLTDSDWTELLGTPNQPSTSAASRSNGASSIRGAKRESRRPSNAGSNMSVLDFKKTQNNANSNKSVGEKKKLNRKASDVDESNISVLLGSNSRVDLKNDKNVTHSEGQELDKKEAGGDILVDAKSVEKREIGGNFDSKGFSSEDSVLAIKNGQSSETVPDTDQTKRISDTNTIVKDARSHRESGVSGKYKSDEVSHSSISDDVRKEWTGSSTSDGSSGSDSDSGSASDSEIESEREEIRRRRQKILAEKAAAKAMEAIKEQEDLVARLEGEKQSLEKILEDRARKQAEEASELQTSMMEIMEAVELEKQKHNETRREALAIMAKLETENADLARTLASVQWNLELEGNRVAGLRQQIELKETTHEELRRRIASSHQAGTSTKPLAFKGIEFELEILEAEHSLIADKVLQLQEKGKKLEENIELMRKEMEEPTEVEVELKRRLGQMTDHLIQKQAQVEALSSERATLLFRIEAVMRQLEESKSMVNMNDISSTSSIDLESAKWELSGSKLRPMLEGKIDSGKKHLGSLIQQLDAIYVAGMVFIRRNPTAKLWSVVYLVFLHLWVLYILMSHSQVDPQTKSGAVISLENINTSLNM 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26336845 26351476 + ClG42_06g0154100.10 Clacu06g1541 252189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1541 958 PANTHER GOLGIN-84 275 953 IPR019177 GO:0000139(PANTHER)|GO:0000301(PANTHER)|GO:0007030(PANTHER)|GO:0007030(InterPro)|GO:0031985(PANTHER)
Clacu06g1541 958 MobiDBLite consensus disorder prediction 404 430 - -
Clacu06g1541 958 ProSiteProfiles small GTPase Rab1 family profile. 8 201 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 320 339 - -
Clacu06g1541 958 Pfam Golgin subfamily A member 5 750 933 IPR019177 GO:0007030(InterPro)
Clacu06g1541 958 CDD Rab11_like 10 174 - -
Clacu06g1541 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 568 590 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 494 603 - -
Clacu06g1541 958 SMART rab_sub_5 13 176 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 533 567 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 291 313 - -
Clacu06g1541 958 SMART ran_sub_2 18 204 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 350 396 - -
Clacu06g1541 958 Coils Coil 672 706 - -
Clacu06g1541 958 Coils Coil 714 734 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 350 443 - -
Clacu06g1541 958 SMART ras_sub_4 10 176 - -
Clacu06g1541 958 Pfam Ras family 14 174 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1541 958 ProSiteProfiles small GTPase Ras family profile. 7 352 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1541 958 NCBIfam small GTP-binding protein domain 12 166 IPR005225 GO:0005525(InterPro)
Clacu06g1541 958 Coils Coil 757 791 - -
Clacu06g1541 958 Gene3D - 5 192 IPR027417 -
Clacu06g1541 958 PRINTS Transforming protein P21 ras signature 151 173 - -
Clacu06g1541 958 PRINTS Transforming protein P21 ras signature 36 52 - -
Clacu06g1541 958 PRINTS Transforming protein P21 ras signature 54 76 - -
Clacu06g1541 958 PRINTS Transforming protein P21 ras signature 13 34 - -
Clacu06g1541 958 PRINTS Transforming protein P21 ras signature 116 129 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 502 532 - -
Clacu06g1541 958 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Clacu06g1541 958 SMART rho_sub_3 15 176 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu06g1541 958 FunFam ras-related protein RABA5a 5 202 - -
Clacu06g1541 958 Coils Coil 599 652 - -
Clacu06g1541 958 MobiDBLite consensus disorder prediction 320 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1541 Clacu-Chr6:26336845 Clacu10g0695 Clacu-Chr10:9778600 4.30E-57 dispersed
Clacu06g1541 Clacu-Chr6:26336845 Clacu11g1957 Clacu-Chr11:30549033 4.60E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g218 . . . . . . . . . . Cma10g00325 Cma11g00306 Car10g00307 . Sed08g0399 . Cpe04g01375 Bhi02g00130 Tan09g1831 Cmetu05g0278 . . . . Cla06g01426 Cam06g1580 Cec06g1640 Cco06g1632 Clacu06g1541 Cmu06g1496 Cre06g2305 . . . . . . . . . . . . . . . . . Cmo10g00350 Cmo11g00312 . . . . . . . . . . . . . . . . . . . . Lsi06g01293 Csa01g00427 Chy02g02317 Cme02g01690
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005982 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38