Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1542 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGTACTTCTTCTTCTTCTTCCACTTCTACTTCTAATTTTGGTTCTAGTTCTGATTCTTCTGATCCTAATCTCAATTACCCTAATCACCATAAGTTTGACCATGTTGATAATGGTGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTACCCACAAACGCAAACCTCTAAGGAAACAACCCCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAAGACGACGATCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAACGGACAAATCACTTCAGACATCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGCAGCTATGGGGTTGTCGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAACCGCTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGACCTGATGACTGATGTGCTTGGCACACCTTCCGCTGAGTCCATTGCTAGGATTCGGAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCTAACGTGGATCGGGAACCATCAACACAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACAAGCTTCATGTACCCAAGTGGGGTTGATCGCTTCAAACGCCAGTTTGCACATCTGGAGGAACATTACGGCAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTCTGTGCACCAAAAGATGAATCCGAACAACACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAAAGTCCCCCAAAGTCGCAAGGAGATGGTTCCGCAAACGCAAACGGTAATGAACAAAATGGACCAAACAAGCCAAATTACAGTGCCCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGATGTTAAACCAAGAAAAGACCTAGAGGAGGAACCGATTACCGAGATGAATGATGAGGCAATTGACGGATTGTCTCATAAGGACATTTTGGCTACAAGGCAAAGTGTAGCGAAGTTTCTGAAGTCAGGTTGTTACCCTCGTGTAGCATGA 1974 42.81 MGSGTLVDGVRRWFQRRTSSSSSTSTSNFGSSSDSSDPNLNYPNHHKFDHVDNGGVNGDQLLSSDLRAQSTITHKRKPLRKQPQLGGEGILEQLPEEEDDDLDYSALKLIKVPKRTNHFRHPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDESEQHNDLEGRNVATSLQSPPKSQGDGSANANGNEQNGPNKPNYSARSLLKSASISASKCIDVKPRKDLEEEPITEMNDEAIDGLSHKDILATRQSVAKFLKSGCYPRVA 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26356467 26362081 + ClG42_06g0154200.10 Clacu06g1542 252190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1542 657 MobiDBLite consensus disorder prediction 539 555 - -
Clacu06g1542 657 ProSitePatterns Protein kinases ATP-binding region signature. 156 180 IPR017441 GO:0005524(InterPro)
Clacu06g1542 657 MobiDBLite consensus disorder prediction 520 593 - -
Clacu06g1542 657 SMART serkin_6 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1542 657 MobiDBLite consensus disorder prediction 16 42 - -
Clacu06g1542 657 Pfam Protein kinase domain 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1542 657 Gene3D Transferase(Phosphotransferase) domain 1 236 464 - -
Clacu06g1542 657 Gene3D Phosphorylase Kinase; domain 1 166 487 - -
Clacu06g1542 657 FunFam Mitogen-activated protein kinase 465 487 - -
Clacu06g1542 657 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 147 482 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu06g1542 657 ProSiteProfiles Protein kinase domain profile. 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1542 657 MobiDBLite consensus disorder prediction 16 61 - -
Clacu06g1542 657 FunFam Mitogen-activated protein kinase 236 464 - -
Clacu06g1542 657 FunFam Mitogen-activated protein kinase 139 244 - -
Clacu06g1542 657 CDD STKc_TDY_MAPK 149 486 - -
Clacu06g1542 657 MobiDBLite consensus disorder prediction 556 593 - -
Clacu06g1542 657 ProSitePatterns MAP kinase signature. 185 288 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1542 657 SUPERFAMILY Protein kinase-like (PK-like) 146 446 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1884 Clacu-Chr2:32334070 Clacu06g1542 Clacu-Chr6:26356467 4.80E-200 dispersed
Clacu06g0566 Clacu-Chr6:6377019 Clacu06g1542 Clacu-Chr6:26356467 1.80E-207 dispersed
Clacu06g1542 Clacu-Chr6:26356467 Clacu09g2259 Clacu-Chr9:37358165 3.30E-197 dispersed
Clacu03g0975 Clacu-Chr3:14826104 Clacu06g1542 Clacu-Chr6:26356467 1.30E-208 transposed
Clacu07g0657 Clacu-Chr7:11992018 Clacu06g1542 Clacu-Chr6:26356467 1.20E-207 transposed
Clacu04g1123 Clacu-Chr4:25509285 Clacu06g1542 Clacu-Chr6:26356467 6.60E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73661 PF00069 Pkinase 1.90E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1542 - - - 0.0