Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g1544 | ATGCAAATGGCTGGTGGTAATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGTCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA | 840 | 52.38 | MQMAGGNQDMAVHSLASKLSVVSEHEPEQCGNNNNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26368922 | 26369938 | + | ClG42_06g0154400.10 | Clacu06g1544 | 252192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g1544 | 279 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 211 | IPR005175 | - | |
Clacu06g1544 | 279 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 64 | 240 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu06g1544 | 279 | CDD | DUF296 | 99 | 181 | IPR005175 | - | |
Clacu06g1544 | 279 | MobiDBLite | consensus disorder prediction | 26 | 47 | - | - | |
Clacu06g1544 | 279 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 95 | 227 | - | - | |
Clacu06g1544 | 279 | Gene3D | - | 98 | 234 | - | - | |
Clacu06g1544 | 279 | FunFam | AT-hook motif nuclear-localized protein | 98 | 225 | - | - | |
Clacu06g1544 | 279 | ProSiteProfiles | PPC domain profile profile. | 95 | 233 | IPR005175 | - | |
Clacu06g1544 | 279 | MobiDBLite | consensus disorder prediction | 20 | 88 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g1544 | Clacu-Chr6:26368922 | Clacu07g0338 | Clacu-Chr7:3843198 | 3.90E-59 | dispersed | |
Clacu06g1544 | Clacu-Chr6:26368922 | Clacu01g0356 | Clacu-Chr1:3547641 | 7.60E-63 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g1544 | - | - | - | 0.0 |