Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1544 ATGCAAATGGCTGGTGGTAATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGTCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 840 52.38 MQMAGGNQDMAVHSLASKLSVVSEHEPEQCGNNNNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26368922 26369938 + ClG42_06g0154400.10 Clacu06g1544 252192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1544 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Clacu06g1544 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu06g1544 279 CDD DUF296 99 181 IPR005175 -
Clacu06g1544 279 MobiDBLite consensus disorder prediction 26 47 - -
Clacu06g1544 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Clacu06g1544 279 Gene3D - 98 234 - -
Clacu06g1544 279 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Clacu06g1544 279 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Clacu06g1544 279 MobiDBLite consensus disorder prediction 20 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1544 Clacu-Chr6:26368922 Clacu07g0338 Clacu-Chr7:3843198 3.90E-59 dispersed
Clacu06g1544 Clacu-Chr6:26368922 Clacu01g0356 Clacu-Chr1:3547641 7.60E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1544 - - - 0.0