Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1552 ATGGCTGAGTTCGATCCATCAAAGAAAGTGGCCGATAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGACAGGCCAGACGGTTGCAATTAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGCGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACTTTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTAGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGTTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCGGAACTACTACTTCGTCGTCCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACTCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCTCGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCCAGAAAGTCGAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCACATCGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGGTAGCTGCTGGAAATTCAAGCAAGAATGAAGCAGTGCCTATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAGTAA 1251 41.41 MAEFDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFSSAPLPTDPSKLPRPTSKREPTNSRVLDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAHRADRLDDHVNEVREVAAGNSSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26432049 26436740 + ClG42_06g0155200.10 Clacu06g1552 252200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1552 416 MobiDBLite consensus disorder prediction 310 332 - -
Clacu06g1552 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Clacu06g1552 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Clacu06g1552 416 MobiDBLite consensus disorder prediction 294 341 - -
Clacu06g1552 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1552 416 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Clacu06g1552 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1552 416 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Clacu06g1552 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Clacu06g1552 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Clacu06g1552 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1552 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Clacu06g1552 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Clacu06g1552 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1552 416 MobiDBLite consensus disorder prediction 371 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1552 Clacu-Chr6:26432049 Clacu11g1574 Clacu-Chr11:26883467 2.80E-69 dispersed
Clacu10g1257 Clacu-Chr10:25434912 Clacu06g1552 Clacu-Chr6:26432049 3.00E-12 dispersed
Clacu06g1552 Clacu-Chr6:26432049 Clacu05g0668 Clacu-Chr5:5621629 9.30E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73662 PF00069 Pkinase 1.70E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1552 K02202 - csv:101217645 820.461