Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1557 ATGATCTTCAACGATGGCAATGAAGAGACTCCCACAATTCGTTCAACAGTCGCACGAAATTCTCGAAGAAAGCTGTACAATACAATGACCGATAGCGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAAACCAAGTCCAAGCGCGGCTCAGATGTCGAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACGGAAGCTTCTGCCAATGAAACTGGACTCTGTACCGCTAGAAACTTGGAAGCTGTTAATGGTGAAGAAGAACTTAAGGTCATCAGGAGGGGACTCGAGTTTGAAATTGAAGCGGATGCGGCCGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGCCAGCTTGGACTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACACGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCACAAGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACGGACGAGGCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTGTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCTTTGACTACTGATAAATCGACGAATAATCCTAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAATGGTCGATTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATCGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTTGGATGCGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCCGTTGATTTTGTCCAGAAATTATTGAAGGATGGCCTGCCCATAGCATCAATAAGTCGACGTCTCGTGAGGGAAGCAATTCGTGAACGGCGCTGCAAAGATAACTGTACCGCAATTGTCATTGTCTTCAGGCCCAAATGA 1140 45.88 MIFNDGNEETPTIRSTVARNSRRKLYNTMTDSAKSILEEETSKLETKSKRGSDVEDADVTVKKFKTEASANETGLCTARNLEAVNGEEELKVIRRGLEFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLHKNVLSAGLPRELLDVKATKKAILDGFRKTDEALLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSLTTDKSTNNPNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLPIASISRRLVREAIRERRCKDNCTAIVIVFRPK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26475957 26486412 + ClG42_06g0155700.10 Clacu06g1557 252205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1557 379 SMART PP2C_4 98 374 IPR001932 -
Clacu06g1557 379 SUPERFAMILY PP2C-like 100 377 IPR036457 -
Clacu06g1557 379 FunFam Probable protein phosphatase 2C 67 90 378 - -
Clacu06g1557 379 CDD PP2Cc 106 376 IPR001932 -
Clacu06g1557 379 Gene3D - 87 377 IPR036457 -
Clacu06g1557 379 ProSiteProfiles PPM-type phosphatase domain profile. 102 376 IPR001932 -
Clacu06g1557 379 PANTHER PROTEIN PHOSPHATASE 2C 70 376 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu06g1557 379 Pfam Protein phosphatase 2C 107 364 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1557 Clacu-Chr6:26475957 Clacu11g1596 Clacu-Chr11:27124233 1.50E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1557 K17500 - csv:101216467 637.106