Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1558 ATGATTGTGACAGGCAAAAGAGAGAGTGAAAAACAAGCAAATATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTTCTTCTTGGATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTTTATCCGGTGTATCGAAACGCGATAGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCTCTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGAATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACATTTGCTTCTGCAATGCAAAACTCAGTGCCTGCTATTACCTTTGTAATGGCTTGTGTTCTGAGACTTGAGCAAGTCAACTTCAGAAGAAGTGATGGTTTGGCAAAGATTTTGGGAACCATTGGGAGTGTTGGTGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATCTTAGAGATGGATGACCCAACAATTAAAGTGCAAAATTGGAGATGGGGTTGTATTTACCTGCTAGGTCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTCTATTGAAAAAGTATCCAGCAAAACTAACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGATTATCAGTACTGGAAAATCCAATCTGCTGAAGAACTCTTCACAATCTTATATGCTGGTGTTGTAGCTTCTGGCATTGTCTTCTCTCTCCAAACATGGTGCATCCACAAGAGTGATCCTGTTTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCGTTTCTCATCCTTGGTGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAAGAAGAAGATAAGTGTTTAAAACATCCCCTTTTGGATGCTCAAAAAGGAGACAAAGAAGACAATGTTGTTCCAGACATACCATGA 1137 41.07 MIVTGKRESEKQANMAKGNLVSEKIKLLLGLIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMACVLRLEQVNFRRSDGLAKILGTIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQASLLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEEEDKCLKHPLLDAQKGDKEDNVVPDIP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26488665 26490969 + ClG42_06g0155800.10 Clacu06g1558 252206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1558 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 61 156 - -
Clacu06g1558 378 PANTHER WAT1-RELATED PROTEIN 32 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu06g1558 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 345 - -
Clacu06g1558 378 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Clacu06g1558 378 Pfam EamA-like transporter family 28 147 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2031 Clacu-Chr5:29288267 Clacu06g1558 Clacu-Chr6:26488665 1.70E-105 dispersed
Clacu06g1558 Clacu-Chr6:26488665 Clacu11g1504 Clacu-Chr11:26195377 3.90E-62 dispersed
Clacu06g1558 Clacu-Chr6:26488665 Clacu08g1626 Clacu-Chr8:26046610 6.60E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1558 - - - 0.0