Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1565 ATGATGGATCCACCACCTCCGGCCAGTGCAACAACGGCCGCCGCTAACTTTGTAGCAACCACCATGCAGCTGCACAACAACTACCAGGATTCCATTGAATCCTCACCTCGTTCCCACAATGCCGATTGGGACGACCCTCTCCCACCAGTTCCCGGTGCCAAGCTCCGCCTCATGTGCAGTTATGGCGGCCACATTATCCCTCGTCCTCATGATAAATCCCTCTGCTATGTCGGCGGGGACACCCGTATTGTCGTCGTCGACCGTCATTCCTCTCTTGCTGACCTCTGTATGCGCCTCTCTCGAACCCTCCTTAATGGCCGCCCATTCACCCTCAAGTACCAACTCCCTCTTGAGGATCTCGATTCCTTAATCTCCATTGCAACGGATGAAGATCTCGAGAACATGATTGAAGAATACGATCGAATCACCATGGCTTCACCTTCAAAACCTTTGCGAATCCGTTTGTTCCTCTTCTTCACTAAGCCTGAAACCGCAGCTTCGATGGGTTCGTTGCTGGACGATGCGAAACATGAAACGTGGTTCGTTGATGCTCTAAATAACTCCGCCGGGATGATTCCGAGAGGACTTTCTGATTCGGCTACTATGGAATGTATGGTGAATCTCGACGCAGTTCATGCGAGTGATTCGTGTAATGATTTGGAAAATCAAGGTCATGATTCTATAGGGCATATTGACAAACAAGTTGTGAAGAATAGTAATTCAGCTCAAGATGTGCAATCGATTCCTGACTCTCCTGCTGTGGAAAATGATTCTTCATTTGGTTCGTCTTCTTCAGTGCCGTCAATGTCCAATTTGCCGCCGATACGTGTCCGTGTGGAAGAGGCAGATCAGGGCAGAGTTCAAGATCCAAAGATGGGATTGGAGGAGCAGTTTGGGCAGATGAATTTTGGTGTTCCTCCAATTCCTACGTCGTTGGCTGGTGTAGCAACTATTCCATTGGGTGTTATTTCAAATCATGAAAATGCTAATCGGGTCTTTCTCGATGATGAGAGATCGGACCAGGGCGGTACGGTGGTGTTTCGGAAGCCTCCATTGCCATTGCAGACCTTGCAAAACAGGGGTGTTGCCAATCCCATTGTTAGCGGTGGTTATGGTCTACCGTCGCCGGATTCTGTTGCCAGCGACAGTAGCATAGCATCTGCAAATTCTCAGTCCAAACCCGTATATTTTCAAGACCAAACTATGAGAGACAACACAATTCCGGGCATTCCCATTGCTGAAAGTGATGGTTTCCTAACAAGTCAACAAGTGCCAATTCAACACCTCCATGATCCTGCTTATCTATTAACTTCACAATTAGATCAGAAGCAACCACAACAACCGCAACAATTCGTCCACACCACCACCCATTACATCCATCACCACCACCCTGCAGCTGCGGCTGCGGGACATGTCCCCGTTCAACAATATTATCATCCTATTTACACAACACCATCTCAACAACAACTTCATCATCCAATTGATCAACAATATCCTGTCTATCTAATGCCCATTACACAGACTCAACCAACCTACAATATGTCTGTGCAATCAAGTCCGGCTGAAACTCCCTTGGCTGTACCCAACAGACAATCATCAGCTAGTCCTGCCATGGTCTCTTCTCCACTTATCTACAATGATAGTAATCAACCATCCCTTTATCCTCAGAAAGTTACTGCGGCTATGCCAGAAATGGCAGCGAGCGTGTACAGAACTGCGGTGACGTCGACTCCTCCTCCCATGTTACAGGTTCCTCACAACCAATACCAACAACCATACATGGGTCTTCCCCAAATGAACTATCCATCTCAATCTATAGGTGTTGCTCCTGCTCCCTCGGGCACTGCTAACTATGGTTTTGACTACACTAATGCTCCACCCCATAACATCCCGGCTACCCCGATGGCTTCTCAGTACCAAACAATGACCCAGGCAGCGGCAGCCGCTCTATCTGATGCTTCTAGACAGCTTCCTGCAGATGGCTCACAGCAGCAGCAGATCAAGAATTCATAG 2013 48.19 MMDPPPPASATTAAANFVATTMQLHNNYQDSIESSPRSHNADWDDPLPPVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKYQLPLEDLDSLISIATDEDLENMIEEYDRITMASPSKPLRIRLFLFFTKPETAASMGSLLDDAKHETWFVDALNNSAGMIPRGLSDSATMECMVNLDAVHASDSCNDLENQGHDSIGHIDKQVVKNSNSAQDVQSIPDSPAVENDSSFGSSSSVPSMSNLPPIRVRVEEADQGRVQDPKMGLEEQFGQMNFGVPPIPTSLAGVATIPLGVISNHENANRVFLDDERSDQGGTVVFRKPPLPLQTLQNRGVANPIVSGGYGLPSPDSVASDSSIASANSQSKPVYFQDQTMRDNTIPGIPIAESDGFLTSQQVPIQHLHDPAYLLTSQLDQKQPQQPQQFVHTTTHYIHHHHPAAAAAGHVPVQQYYHPIYTTPSQQQLHHPIDQQYPVYLMPITQTQPTYNMSVQSSPAETPLAVPNRQSSASPAMVSSPLIYNDSNQPSLYPQKVTAAMPEMAASVYRTAVTSTPPPMLQVPHNQYQQPYMGLPQMNYPSQSIGVAPAPSGTANYGFDYTNAPPHNIPATPMASQYQTMTQAAAAALSDASRQLPADGSQQQQIKNS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26550843 26553333 + ClG42_06g0156500.10 Clacu06g1565 252213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1565 670 SMART PB1_new 69 158 IPR000270 GO:0005515(InterPro)
Clacu06g1565 670 MobiDBLite consensus disorder prediction 514 533 - -
Clacu06g1565 670 Gene3D - 74 158 - -
Clacu06g1565 670 MobiDBLite consensus disorder prediction 650 670 - -
Clacu06g1565 670 MobiDBLite consensus disorder prediction 238 273 - -
Clacu06g1565 670 CDD PB1_UP2 58 158 - -
Clacu06g1565 670 ProSiteProfiles PB1 domain profile. 54 158 IPR053793 -
Clacu06g1565 670 Pfam PB1 domain 70 158 IPR000270 GO:0005515(InterPro)
Clacu06g1565 670 SUPERFAMILY CAD & PB1 domains 70 169 - -
Clacu06g1565 670 PANTHER OS05G0427100 PROTEIN-RELATED 24 587 IPR053198 -
Clacu06g1565 670 MobiDBLite consensus disorder prediction 238 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1565 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2323 Clacu-Chr1:34066906 Clacu06g1565 Clacu-Chr6:26550843 3.40E-33 dispersed
Clacu06g1565 Clacu-Chr6:26550843 Clacu02g1913 Clacu-Chr2:32693006 1.90E-22 dispersed
Clacu08g1343 Clacu-Chr8:23441057 Clacu06g1565 Clacu-Chr6:26550843 6.60E-33 transposed
Clacu09g1704 Clacu-Chr9:30688174 Clacu06g1565 Clacu-Chr6:26550843 1.10E-29 transposed
Clacu05g2436 Clacu-Chr5:32582254 Clacu06g1565 Clacu-Chr6:26550843 1.50E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33