Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1574 ATGGCGACGCCTTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTCAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAAGGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATTCGCAATGAGCTTGATACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCGGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGCGAAAGTAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAACAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTGTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAAGGTAGTCCCTGAGGAAAAGCTTCTTCGGCAGGTCATATTTACTTGGATGGAAGCTAGAAGTAGTGACAATGTATCAACAAGTTGGTGTGGTGATTCTCTAGTTGGATATCATACAGATCCTACTTCTGATACATCAAATCATCAAACCGGAAATGTAAATTGTGCTTGTGAATCAACCAGCCATGGGAAAAGAAAATACTTGGAGTCAAGTTCTGAGATATCGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGCGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAACACTTCAGTTTCAAGAGACAACGAGAATTATTGTATCAAAGCTTGTGCATGATGCCTCTGAAACTGATCGAGCGTGTCTTGCCATGGCTAGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAATTGGCAGCTCCAGCCAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGGTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGCTAATGCCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAGAAGCTGTGATGGCCATATTGCTTCAGAGACTGTTAATATCCAGCAACAATGTTGTGGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTTTGCACCATCTCTTAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGCCTCTTCTGATGTTGGCTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTATTGATTGTGATGGAACTTTTCTCCGGCAATTTATCGGAAGATTTCGTCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTGGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTTTCCCAGAAGTGATGTTGGGGCTGTTAATGTGGTGGGGAAGGATTGTAGCAGAAACTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCACTCTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGACGTATCATTGGAACCACAGGTGCCGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTTAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGAGGTAGCAGGGCGAACAGCATCTTTTCGCTGTGCAGAGAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAATTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGTTTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAACTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGGCCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTCCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCGGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGTGTAATCAAGAATGATACCACATCTGCTGATTGCCCTTCTTCCAATCAGGCTCCTCTATTTTTCCAGCTTACCAAGCTCGAATTCAAGCTCATGGCTATGCCGCCTGATAGATCAAACCCACTTCACAACTTCTCTTTGCCGTATCTCAAATGGGGTTCACAGAGATTCCTCAAGTGTATGAAGGTTTCTTCTAACTCCAACCCTTCTACCCTTGATCATCCTTCTATTCAACGCCAATCGAAATCCTATCAATTCCGAGCCAGACCCATCAATTCTAAGCCCACGAACTTCACCAAGCTTTCTTCTCCGATGAACCCGAATCATTCCAAACAGAAACCAACCAACGATCGAAGCAGTTCCATCGAAATTATGCGAGAGAAGATCATGCTTGATATTAGGGAGGAATCGAAGAGACTGAAGTTTTCAATTGCTGATGAAGGGGGTGAGGATGAATCTGCTGCGGCTCGGCCGTGGAATTTAAGGACTCGCAGAGCAGCATGTAAGGCTCCTCAAGACGAGAGGAATCCGGAATTGGGTTCATCTTCAACCAAGGCTGTAATGAAGAAAAAGGAGAAGAATCGGACTGCGTTATTTGTCTCGCTGTCGAAAGAGGAGCTTGAAGAGGATTTTGCGGTGCTGGTTGGTAGGTTACCGAGGAGGCCAAAGAAGAGGCCAAGAGCTGTACAAAGGCAAATGGATGCACTTTTTCCTGGACTGTTGCTGACTGAAATTACTCTAGATTCATATAAAGTTGATGATGTTCCTGAAGCTTGA 4494 42.9 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPKDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLRQVIFTWMEARSSDNVSTSWCGDSLVGYHTDPTSDTSNHQTGNVNCACESTSHGKRKYLESSSEISDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNAFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALGAREGPKSDPETNANAKRPAIRNVPMPCRSCDGHIASETVNIQQQCCGDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSFAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLIDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFPRSDVGAVNVVGKDCSRNYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEEVAGRTASFRCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTTSADCPSSNQAPLFFQLTKLEFKLMAMPPDRSNPLHNFSLPYLKWGSQRFLKCMKVSSNSNPSTLDHPSIQRQSKSYQFRARPINSKPTNFTKLSSPMNPNHSKQKPTNDRSSSIEIMREKIMLDIREESKRLKFSIADEGGEDESAAARPWNLRTRRAACKAPQDERNPELGSSSTKAVMKKKEKNRTALFVSLSKEELEEDFAVLVGRLPRRPKKRPRAVQRQMDALFPGLLLTEITLDSYKVDDVPEA 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26619866 26635026 + ClG42_06g0157400.10 Clacu06g1574 252222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1574 1497 Pfam Hemerythrin HHE cation binding domain 310 443 IPR012312 -
Clacu06g1574 1497 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
Clacu06g1574 1497 Pfam Hemerythrin HHE cation binding domain 660 822 IPR012312 -
Clacu06g1574 1497 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270(InterPro)
Clacu06g1574 1497 Pfam Protein of unknown function (DUF1639) 1441 1489 IPR012438 -
Clacu06g1574 1497 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Clacu06g1574 1497 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270(InterPro)
Clacu06g1574 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Clacu06g1574 1497 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Clacu06g1574 1497 SMART ring_2 1136 1177 IPR001841 -
Clacu06g1574 1497 Pfam CHY zinc finger 1007 1075 IPR008913 GO:0008270(InterPro)
Clacu06g1574 1497 Gene3D nmb1532 protein domain like 655 887 - -
Clacu06g1574 1497 CDD RING-H2_Pirh2-like 1135 1178 - -
Clacu06g1574 1497 CDD Hr-like 51 177 - -
Clacu06g1574 1497 SUPERFAMILY RING/U-box 1135 1181 - -
Clacu06g1574 1497 Gene3D - 1207 1251 - -
Clacu06g1574 1497 Gene3D nmb1532 protein domain like 46 197 - -
Clacu06g1574 1497 Gene3D nmb1532 protein domain like 312 459 - -
Clacu06g1574 1497 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1242 - -
Clacu06g1574 1497 MobiDBLite consensus disorder prediction 1406 1427 - -
Clacu06g1574 1497 Pfam Ring finger domain 1135 1177 IPR001841 -
Clacu06g1574 1497 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Clacu06g1574 1497 CDD Hr-like 313 441 - -
Clacu06g1574 1497 MobiDBLite consensus disorder prediction 1329 1358 - -
Clacu06g1574 1497 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Clacu06g1574 1497 CDD Hr-like 662 822 - -
Clacu06g1574 1497 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1574 Clacu-Chr6:26619866 Clacu09g0627 Clacu-Chr9:5373348 4.00E-41 dispersed
Clacu01g0437 Clacu-Chr1:4418572 Clacu06g1574 Clacu-Chr6:26619866 1.40E-14 transposed
Clacu06g1753 Clacu-Chr6:28105731 Clacu06g1574 Clacu-Chr6:26619866 3.00E-223 transposed
Clacu05g2454 Clacu-Chr5:32695110 Clacu06g1574 Clacu-Chr6:26619866 3.60E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1574 K16276 - csv:101215023 2429.05