Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1579 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAGTTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCTCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCAGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.25 MADHDFTSFPLEDPNLELMASHFSPSIPSFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 26672764 26674426 + ClG42_06g0157900.10 Clacu06g1579 252227
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1579 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Clacu06g1579 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu06g1579 260 MobiDBLite consensus disorder prediction 93 155 - -
Clacu06g1579 260 FunFam transcription factor BEE 3-like 146 217 - -
Clacu06g1579 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Clacu06g1579 260 MobiDBLite consensus disorder prediction 96 117 - -
Clacu06g1579 260 Coils Coil 226 246 - -
Clacu06g1579 260 CDD bHLH_AtBPE_like 139 224 - -
Clacu06g1579 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Clacu06g1579 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Clacu06g1579 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Clacu06g1579 260 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1579 Clacu-Chr6:26672764 Clacu06g1926 Clacu-Chr6:29543167 1.10E-26 dispersed
Clacu05g1315 Clacu-Chr5:13565226 Clacu06g1579 Clacu-Chr6:26672764 1.30E-34 transposed
Clacu08g0643 Clacu-Chr8:15077993 Clacu06g1579 Clacu-Chr6:26672764 3.90E-38 transposed
Clacu04g1171 Clacu-Chr4:25892325 Clacu06g1579 Clacu-Chr6:26672764 2.90E-51 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47923 PF00010 HLH 4.30E-05 No_clan Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1579 - - - 0.0