Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g1579 | ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAGTTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCTCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCAGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA | 783 | 41.25 | MADHDFTSFPLEDPNLELMASHFSPSIPSFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26672764 | 26674426 | + | ClG42_06g0157900.10 | Clacu06g1579 | 252227 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g1579 | 260 | Gene3D | - | 146 | 217 | IPR036638 | GO:0046983(InterPro) | |
Clacu06g1579 | 260 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 93 | 233 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Clacu06g1579 | 260 | MobiDBLite | consensus disorder prediction | 93 | 155 | - | - | |
Clacu06g1579 | 260 | FunFam | transcription factor BEE 3-like | 146 | 217 | - | - | |
Clacu06g1579 | 260 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 147 | 217 | IPR036638 | GO:0046983(InterPro) | |
Clacu06g1579 | 260 | MobiDBLite | consensus disorder prediction | 96 | 117 | - | - | |
Clacu06g1579 | 260 | Coils | Coil | 226 | 246 | - | - | |
Clacu06g1579 | 260 | CDD | bHLH_AtBPE_like | 139 | 224 | - | - | |
Clacu06g1579 | 260 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 149 | 199 | IPR011598 | GO:0046983(InterPro) | |
Clacu06g1579 | 260 | Pfam | Helix-loop-helix DNA-binding domain | 153 | 200 | IPR011598 | GO:0046983(InterPro) | |
Clacu06g1579 | 260 | SMART | finulus | 155 | 205 | IPR011598 | GO:0046983(InterPro) | |
Clacu06g1579 | 260 | MobiDBLite | consensus disorder prediction | 123 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g1579 | Clacu-Chr6:26672764 | Clacu06g1926 | Clacu-Chr6:29543167 | 1.10E-26 | dispersed | |
Clacu05g1315 | Clacu-Chr5:13565226 | Clacu06g1579 | Clacu-Chr6:26672764 | 1.30E-34 | transposed | |
Clacu08g0643 | Clacu-Chr8:15077993 | Clacu06g1579 | Clacu-Chr6:26672764 | 3.90E-38 | transposed | |
Clacu04g1171 | Clacu-Chr4:25892325 | Clacu06g1579 | Clacu-Chr6:26672764 | 2.90E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47923 | PF00010 | HLH | 4.30E-05 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g1579 | - | - | - | 0.0 |