Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1584 ATGGCCTTCGCAACTACCAAACTATCGGAACTTCCATTGAAGAGCTCACTTCCACTCTCCTCCCACTCCCGTACTCTTCTCTCAAACCCCAATTTGTCTTTGCAGATTCTAAACACATTCTCTTCTCTCCGAACCCCCACTGAGCATAGCGGCAAAAGAACTCCTAAAACCTCCCACAATTCTGGACCCCCATCTTCTTCTTCTTCCTCTTGGATCTCCAAATGGCCTCCTGGGAGCCCTCGGTATGATCGTAAAGTTGAGAAGAAGGTGGTCCAACCGACCCGAGATGATCGGACCGATCGAGCGGAGAATCAAACGCAGTACTTTGATAAGGACAAAGGGCAGACTGCAATTGAGCGAATTGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGACGAGGATGAGGAGGATAAAGACGATAACGATTTGGATTCTCCGGAGGCAATGCCGGTGACTGGAGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGGGCATTGGATTCGAAAGAGGATGGGGAGGATGAAATGGTTCTACCATGGGAGAGAGAAGAGGAAAGGGCTGAAGAGGAGGAGGGCGGAAGAGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACATTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTCTTAGAGAGCGGATTAATGTACCGAAAGCTGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTTCATGAGGAGCTTGCGCACGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACCGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTAATGGTAGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCCTTACAAGGGAGGGGGATGGGGTGTTCATCCCAGATGTTGCTTCTGCTGCCCCTTCGGCAATGAGTGAGAATGTTGCAGCTTCAGCTCCAGAGAAGACCAAGATGCCTATTGGGCCTCCAAAGTCTAATGAGGGCATGTCAGAGGAAGAGGCTGAATACAACCAGTTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAATTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGTTTGGCTATTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAACTTAACAGGAGGTGTGTTACTATTGAGAAATAAATATTTCATCGTCATATACCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCCGTAGCTTTGGCAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGTGGTTGAGGCAACTTCGTCAAGCATTGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACATAAACTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAGATTGCTATCTAAAATTGAAGCATCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACAGATGAGGAACGGGTCATGTTTCGGAGAGTTGGGTTACGGATGACAGCATATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTGGAAAACATGCATTTACACTGGAAACATAGAGAGGTTGTGAAGTTAATTAGCAAGCAAACAACACTTGCTTTTGTGGAAGAAACTGCAAGACTGTTAGAGTATGAGAGTGGTGGAATACTAGTTTCAATAGATAGAATTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGTTCAGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATAATAATAACTGGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACAAGGAAGCATCTTTGTCTGCGTTTTCAGATGGTGACGATGATGAAGATAGCATTGACGAAGACAGTGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGATTCAGAAGGCACCGATGATCTACTGAACTAG 2508 44.82 MAFATTKLSELPLKSSLPLSSHSRTLLSNPNLSLQILNTFSSLRTPTEHSGKRTPKTSHNSGPPSSSSSSWISKWPPGSPRYDRKVEKKVVQPTRDDRTDRAENQTQYFDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDKDDNDLDSPEAMPVTGEERLGDLLQREWIRPDGALDSKEDGEDEMVLPWEREEERAEEEEGGRGLKRRKMKAPTLAELTIEDEELRRLRRMGMFLRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPLTREGDGVFIPDVASAAPSAMSENVAASAPEKTKMPIGPPKSNEGMSEEEAEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKFAKSLPCHFALGRNRNHQGLAIAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIRNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKQIQDVEEKARSKVVEATSSSIDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAERLLSKIEASMVLSGPDDDQETITDEERVMFRRVGLRMTAYLPIGIRGVFDGVVENMHLHWKHREVVKLISKQTTLAFVEETARLLEYESGGILVSIDRIPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEDSDDNNNWSSQDGPVSESFQDKEASLSAFSDGDDDEDSIDEDSEYEEDEDFDFSDSEGTDDLLN 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26709471 26713522 + ClG42_06g0158400.10 Clacu06g1584 252232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1584 835 FunFam CRM-domain containing factor CFM3B, chloroplastic 627 729 - -
Clacu06g1584 835 FunFam CRS2-associated factor 1, chloroplastic 417 513 - -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 131 154 - -
Clacu06g1584 835 Coils Coil 746 773 - -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 191 211 - -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 773 796 - -
Clacu06g1584 835 SMART CRS1_YhbY_2 221 304 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 SMART CRS1_YhbY_2 628 715 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 SMART CRS1_YhbY_2 418 502 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 SUPERFAMILY YhbY-like 220 313 IPR035920 -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 768 835 - -
Clacu06g1584 835 ProSiteProfiles CRM domain profile. 219 315 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 MobiDBLite consensus disorder prediction 43 112 - -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 132 147 - -
Clacu06g1584 835 SUPERFAMILY YhbY-like 627 725 IPR035920 -
Clacu06g1584 835 Gene3D - 627 729 IPR035920 -
Clacu06g1584 835 Gene3D - 417 509 IPR035920 -
Clacu06g1584 835 Gene3D - 219 316 IPR035920 -
Clacu06g1584 835 ProSiteProfiles CRM domain profile. 626 726 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 MobiDBLite consensus disorder prediction 80 112 - -
Clacu06g1584 835 Coils Coil 511 538 - -
Clacu06g1584 835 SUPERFAMILY YhbY-like 418 510 IPR035920 -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 340 362 - -
Clacu06g1584 835 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 44 807 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Clacu06g1584 835 MobiDBLite consensus disorder prediction 801 835 - -
Clacu06g1584 835 MobiDBLite consensus disorder prediction 1 28 - -
Clacu06g1584 835 FunFam CRS2-associated factor 1, chloroplastic 220 315 - -
Clacu06g1584 835 ProSiteProfiles CRM domain profile. 416 513 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 MobiDBLite consensus disorder prediction 56 75 - -
Clacu06g1584 835 Pfam CRS1 / YhbY (CRM) domain 418 502 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 Pfam CRS1 / YhbY (CRM) domain 628 715 IPR001890 GO:0003723(InterPro)
Clacu06g1584 835 Pfam CRS1 / YhbY (CRM) domain 222 304 IPR001890 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1584 K27708 - - csv:101219948 1328.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0528 Clacu-Chr5:4382684 Clacu06g1584 Clacu-Chr6:26709471 7.30E-134 dispersed
Clacu06g1584 Clacu-Chr6:26709471 Clacu10g1452 Clacu-Chr10:27661219 9.10E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g700 . . . . Bpe01g00652 . . . Cmo10g00488 Cmo11g00446 . . . . Sed08g0566 . Cpe18g00578 Bhi02g00857 Tan09g1584 Cmetu02g1690 . Hepe09g0557 . . . . . . . . . . . . . Lsi06g01075 . . Cme02g01040 . Blo14g00604 . . . . . . . . . Cma10g00453 Cma11g00445 . . . . . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . Csa01g01906 Chy02g02141 .
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32