Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1588 ATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCAGTTCTGAAAGGGGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACGGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACAGTCGGATGCTGACTTATGACAATAGAGTTAAGCGGGATATTACCGTTGACAATTGTCTCGAAGTCCCCAATGTCGGCAAGAGTGGTGGGCTAATGTTGCTATGGAATAACGATGTGGATGCCAATGGGGTATTGCCAGAAAAGAACAGGAAATTCAGGAGATCAGTAATCAAGCTCCCAAATTGGCATTCTAATATGATTAAGGTTGAAAAAGAGCTTGAACAGTTGTTGGAGGAAGAGGAGATGTTTTGGAAACAACACTCGCGAGAGGACTGGATAAATTGGGGTGATCATAATACTACGTGGTTCCATCAAAGAGCTTCCCATTGTAGGAGGACCAACAAGATTCACAAACTCCAGAATGGATCCTTGTTCCCTTTCTCTGCGTCTGAGATTGAAGCAGTCGTGAAGAATATGGCCTTGCTGAAAGCTCCTGGGCCTAACGATTTGAATGCTTTTTCCTTTCAAAAGTATTGGATTGAAGTGGGAGCTACCACTGTCAACTTGTGTCTAAATATTCTGAATGGGGAGGAAATGATTGGGGGATTAAATTCCACATCTATTGTCCCCAATCCGAAGAACATTAAGCCAAAAACAATGCGAACTAGAAAATCCGGGGTGGCAGAGGTAAAACTTGATATGAGTAAAGCATACGATTGGGTGGAATGGAGTTACCTTCACGAAAGTTTAAGCCTTCTAGGGAGTTGCGGCAGGGGACCAGTTATCACCATATCTCTTCCTGATTTGCTCAGAAAACCTTTTTGCGCTGTTTCAGGAGAAGGAACACCAAGCGAAGTTCTCAGGTTTCTAAAGGATCGTGTTTAG 1551 49.77 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGHSRMLTYDNRVKRDITVDNCLEVPNVGKSGGLMLLWNNDVDANGVLPEKNRKFRRSVIKLPNWHSNMIKVEKELEQLLEEEEMFWKQHSREDWINWGDHNTTWFHQRASHCRRTNKIHKLQNGSLFPFSASEIEAVVKNMALLKAPGPNDLNAFSFQKYWIEVGATTVNLCLNILNGEEMIGGLNSTSIVPNPKNIKPKTMRTRKSGVAEVKLDMSKAYDWVEWSYLHESLSLLGSCGRGPVITISLPDLLRKPFCAVSGEGTPSEVLRFLKDRV 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26746811 26750745 + ClG42_06g0158800.10 Clacu06g1588 252236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1588 516 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Clacu06g1588 516 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Clacu06g1588 516 Coils Coil 301 321 - -
Clacu06g1588 516 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2248 Clacu-Chr5:30895015 Clacu06g1588 Clacu-Chr6:26746811 1.80E-31 dispersed
Clacu05g1330 Clacu-Chr5:13981906 Clacu06g1588 Clacu-Chr6:26746811 8.90E-73 transposed
Clacu10g0686 Clacu-Chr10:9627013 Clacu06g1588 Clacu-Chr6:26746811 8.00E-08 transposed
Clacu05g2466 Clacu-Chr5:32783164 Clacu06g1588 Clacu-Chr6:26746811 8.90E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47925 PF03195 LOB 2.60E-21 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1588 - - - 0.0