Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1599 ATGTATGGTGGTGATGAGGTATCCGCTATAGTTATTGATCTGGGTTCTCACACTTGCAAAGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCTGTTTTCCCCTCTGTTGTTGGATGTACCGATGAAATGGATGTTGATGACCCTACAAGTGCTGAAAAGAACTCTGGATCTGCTGGAGAACCTAAAAGTAATGCTAAAACTCTTGATTCTGATAAAGGCAAGGGAAAACGCAAACTGTACGTTGGTTCTCAAGCTTTAGGGTTTCGCCGTGATAATATGGAAGTACTCTCGCCTATAAAGGACGGAGTTGTTGTTGACTGGGATATGGTTGATAGCATATGGGACCATGCTTTCAGAGAATGTCTACTTATTGATCCTCAAGAACATCCCATGCTACTTGCGGAACCATCTTCTAATTCACAACAACAGAGAGAAAGGACGGCTGAGATTATGTTCGAGAAGTACAAAGTTCCTGCGTTGTTTTTGGCAAAAAATGCTGTTCTCACGTCATTTGCATCAGGTCGTGCTACATCACTTGTTGTTGACAGTGGTGGTGGATCAACAACTGTTGCCCCGGTACATGATGGTTATGTTCTACAAAAGGCTGTTGTATCTTCCCCTGTTGGTGGAGAATTTCTTACTGATTGTTTGTTAAAAAGTTTGGAGAGCAAAGGTATCAAGATAATGCCAAGATACTCCTTCAAGAGAAAGGAAATACGACCAGGAGAGTTTCAGATAGTGGAACTTGATTTCCCAAATACGACTGAAAGTTACAAACTGTACTCACAGAGGGTAATTGCTAGTGATATAAAAGAATGCGTATGCCGAGCACCAGATACTCCTTATGATGAAAGTGCGTATTCAAATATCCCAATGACTCCATATGAACTTCCTGATGGCCAGACAATTGAAATTGGGGCTGATAGATTCAAGATTCCTGATGTTCTGTTTAACCCTTCATTAGTACAGACTATACCTGGGATGGAGAGTTTCACTGAGACAGCTCGCTCAGTTCAGGGATTGCCGCATATGGTAATCGAGAGTATAAATAAATGTGATGTGGATATTCGCAGAGAACTGTTTAGCAGCATACTGCTTGCTGGTGGAACAGCATCAATGCAACAGCTCAAAGAACGTCTTGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCGAGTGGAAATGCAACTGAAAGAAGATTCAGTGTCTGGATAGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAATCCGAGTACGAAGAACATGGAGCTTCTTATATTCAAAGAAAATGCCCCTAG 1338 42.23 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGCTDEMDVDDPTSAEKNSGSAGEPKSNAKTLDSDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDPQEHPMLLAEPSSNSQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVVSSPVGGEFLTDCLLKSLESKGIKIMPRYSFKRKEIRPGEFQIVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLVQTIPGMESFTETARSVQGLPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26825772 26835595 + ClG42_06g0159900.10 Clacu06g1599 252247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1599 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Clacu06g1599 445 Gene3D - 184 384 - -
Clacu06g1599 445 CDD NBD_sugar-kinase_HSP70_actin 97 204 - -
Clacu06g1599 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Clacu06g1599 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Clacu06g1599 445 MobiDBLite consensus disorder prediction 50 64 - -
Clacu06g1599 445 SMART actin_3 7 445 IPR004000 -
Clacu06g1599 445 Gene3D - 389 445 - -
Clacu06g1599 445 MobiDBLite consensus disorder prediction 43 75 - -
Clacu06g1599 445 PANTHER ACTIN 8 437 IPR004000 GO:0003682(PANTHER)|GO:0006357(PANTHER)|GO:0016514(PANTHER)|GO:0035267(PANTHER)|GO:0043044(PANTHER)|GO:0043967(PANTHER)
Clacu06g1599 445 FunFam Actin-related protein 4 1 183 - -
Clacu06g1599 445 FunFam actin-related protein 4 387 445 - -
Clacu06g1599 445 Gene3D - 4 183 - -
Clacu06g1599 445 Pfam Actin 4 444 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1599 K11340 - - csv:101218049 867.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1599 Clacu-Chr6:26825772 Clacu09g1411 Clacu-Chr9:19447196 3.60E-75 dispersed
Clacu06g1599 Clacu-Chr6:26825772 Clacu02g2076 Clacu-Chr2:34013878 3.60E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33