Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1605 ATGGTGGTTGAGAAACGCGGGAGGGCGTGTGTGTTGAAGAGGGGTGGAGGGCTTTTTGAGGTGAAGGAAGTTGTGCGTGGAGGAGGAATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATATTTTTTCCCCTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCGCATAATCGTCATTGGGCACCGTGTCATGCTGTTGTTGCCACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAAAGCCTATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTGTTTTAATTGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGCGATGAGGCAATATGGGAGACACTGCCTCACTTTTGGATTGCTATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATAAATTTTGGCATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAACATTCAGACAAGAGAACGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTCCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTGCGGGTGCTAAAAGTATGCCACTTCCCGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTTTTTCAGTTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCTGAGATTGTGAAGAAGATGCCCAAGAAAGATCTAGCAGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGGCTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGCGTACTATGCAGTTCCTGCTGTGAGAAGTGTAAAAAGTGCCCAATATGTCGCGTGGTTATCGAAGAAAGTCCAATCCCGAAACGATACTTGTTTCTCGTCGATCCAGATTGGTTCAGGCTGGAATTTGATTGTTACTGGGGTCGTCAGTTTAGGTTTTCCAGTACATTGTTTCGCCTGGCGCTGATTATTTTCAGTGCGCATCTAAGTGGGGGAAAACACGTGAATTATTAG 1632 44.49 MVVEKRGRACVLKRGGGLFEVKEVVRGGGMTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIVLIDNFRMCRSLMPGDDESMSDEAIWETLPHFWIAISMVFFVAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSAVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPAGAKSMPLPVLFSPLFILQGAAVIYAASRLLEKAVLLLRGGSGTALYFSFSVRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCCEKCKKCPICRVVIEESPIPKRYLFLVDPDWFRLEFDCYWGRQFRFSSTLFRLALIIFSAHLSGGKHVNY 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26868195 26878326 - ClG42_06g0160500.10 Clacu06g1605 252253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1605 543 SUPERFAMILY RING/U-box 440 490 - -
Clacu06g1605 543 SMART ring_2 449 483 IPR001841 -
Clacu06g1605 543 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 30 490 - -
Clacu06g1605 543 Pfam Zinc finger, C3HC4 type (RING finger) 446 489 - -
Clacu06g1605 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 491 IPR013083 -
Clacu06g1605 543 Pfam Transmembrane Fragile-X-F protein 57 321 IPR019396 -
Clacu06g1605 543 ProSiteProfiles Zinc finger RING-type profile. 449 484 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1605 - - - 0.0