Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1612 ATGGATGCTCGCCGAGGCTCCCGCATCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACCCTCCTAATTCCCCCGACCGCACCCTCTCCGGTCCCCCCAACTGTCTCCCTTCTCAACAATCCCTATCTCCTCCCACCAATTCCTTGTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGATAACCTTGCCTCTCGTTCTGCTGTTCTTCCTGTTCCGGCTCCCGCTAATTGGAGGAATTCCGCCGATCAGATTCCTGTTGGTAGTTATAACCCTTCCGAGACGCTGCTTGCGACGTCCCCTATGGCGTCGCCTTCCAGTAGAATTGAGGATGAAGAGCTGGAGATGTCAGAGGATTCTTCCAACTCCGTATGGTATCGCCGGAGCGGTTCTGGGAAGATTGCCTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGTTAAGTCGTTGGAGAATTCGCAGGCACTGCCTCTTCAGACGTTGGAAATTAATAAGCCTGCTGGAGTTGCAGAAAAGAATGGAGGACCATCCACGGAGGTACAGAATCGACAACCACCACCAAATACTAAACCCTTGAAGGCAAAAACAACAAAGGCTGAAAGACGAGCTCTGCAGGAGGCACAACGAGCTGCAAAAGTCTCTGCAAAAGGTGAGGCTAATAAGTCAGGTACTGCTCCTGGTAAAGCTGTGAAGCAGCCAGCAGCTATGAAAGATAGTACTGCCACACCTTCGGTTGCACCAACTGACAAAAGAGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAACGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAACTTCCTGATCTCGTGTCAAAGTTTTTCCATCTTGACCCCATTCATCCTGCAATTTACAAGGTTGGTTTGCAATATATGGCCGGAGATATATGTGGGGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTAGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTATCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCGCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATCATAATTGCAGATGAGGTCATAGTCAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTTTACTCACATATGGATCATCGTCTGCTGTAGAGATGCTTGTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACAAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGCGAGGGGCCTGAATTGTACATACACTCATATAAATGCCATTTCTTACGTGATGCATGAAGTAACTCGAGTTTTTCTAGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCAAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAACGAATTAGGTGATCCGGATGCTATCTCAAAGGTTCCAGAAAGGAAGGATGTTAATTATCTAGATAATCTGACCGCTAAAGATCAACTGCAACTTCTAAATTTAATGTATGACGCTACACCTTCAGATTACATCTCAATGATCGTCACAGATTATGGCATGATTCCACCTACAAGCGTGCCAGTAATCGTGCGTGAGTACCGGAGAGAGCACCTGTGGATATAA 1962 45.92 MDARRGSRIVNPKVRQVGFFTLDPPNSPDRTLSGPPNCLPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVLPVPAPANWRNSADQIPVGSYNPSETLLATSPMASPSSRIEDEELEMSEDSSNSVWYRRSGSGKIASSFPGVGIHMAVKSLENSQALPLQTLEINKPAGVAEKNGGPSTEVQNRQPPPNTKPLKAKTTKAERRALQEAQRAAKVSAKGEANKSGTAPGKAVKQPAAMKDSTATPSVAPTDKRGGDRTLDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFHLDPIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGSYVSFFNECRPLSVSMGNAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSSAVEMLVLYAHELGKEFRVVVVDSRPKQEGQALLRRLIARGLNCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPERKDVNYLDNLTAKDQLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26953755 26958195 - ClG42_06g0161200.10 Clacu06g1612 252260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1612 653 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 46 650 - -
Clacu06g1612 653 MobiDBLite consensus disorder prediction 255 283 - -
Clacu06g1612 653 MobiDBLite consensus disorder prediction 17 63 - -
Clacu06g1612 653 MobiDBLite consensus disorder prediction 172 283 - -
Clacu06g1612 653 SUPERFAMILY NagB/RpiA/CoA transferase-like 300 646 IPR037171 -
Clacu06g1612 653 Pfam Initiation factor 2 subunit family 346 636 IPR000649 GO:0044237(InterPro)
Clacu06g1612 653 MobiDBLite consensus disorder prediction 179 195 - -
Clacu06g1612 653 Gene3D - 439 646 IPR042529 -
Clacu06g1612 653 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1612 Clacu-Chr6:26953755 Clacu06g1613 Clacu-Chr6:26961624 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1612 K03680 - csv:101215104 1221.07