Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1615 ATGCCTGTTTCGACTCGGTCTCAGATCATGATCGACGGACAGATGGATCAAATTCCAGGTCAAGAAGACAAACAGCAACTGAATCTTCCACCTAGAAATCTTCACCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAACAAAAGCTTGCTTCAGCAGCTCTTAAGAGGCCGTCACCAAAAGGGGAAGATCTAAGATTCACAACACATCCGAGCGTTGAGCTTAATGGTTCTTGTAAGAAAGAGGAGAAAGAGCCGAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCAACTGTTACAAGAACTTATGTTCTTCCCCAACCACCGATGGCTGATGCAAAGGAGAATGTAGTGGTTGGAACGGATCGGATTGTCGGGTTTTCATGCTCAAAAAAGGCGAGTTTGTCAACGAATGTGGCGAGGAAATTGTCACTAGGGAACCCAATGCCTTTGGTGGAAATGAAGGAGAATGTGGGGTGTAAGAAATTGCAAGAAATGGAGGAATTGGGGAGTTTTTCAGAGAAGGAGAGTTTGGGGGAAAGTCGGATTTTGGTGTTTGTGAGGCTGAGACCAATGGCTAAGAAGGAAAAGGAAGCGGGAGCGAGGAGTTGTGTTAAAATAGTGAATAGAAGAGATCTTTATTTGACAGAGTTTGCTAATGGGAATGATTATTTGAGACTGAAGAGGCTTCGTGGACGCCATTTTACCTTCGACGCTTCATTTCCTGACACCACTAATCAGCAAGAAGTCTATTCCACCACGACAGCAGAGCTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTGTTCTGCTATGGTGCCACTGGGGCTGGGAAAACCTACACAATGCTAGGAACGGTTGAGAACCCTGGAGTTATGGTTTTGGCTATCAAAGATCTCTTCACCAAGATTAGGCAGAGGAGCTGTGATGGGAACCATACAGTCCAACTCTCTTACATTGAGGTCTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTAAGAGAAGACAAGCAGGGAATTGTTGCTGCTGGTCTTACACAATACAGAGCTTACTCCACAGATGAAGTGATGGCCTTGCTTCAGCGAGGAAACCAAAACCGAACGACTGAACCGACCCGTGTTAACGAAACTTCTTCGCGTTCCCATGCTATACTGCAGGTTACAGTTGAATATCGAGCGAGAGATGGAGGAATGAAAGTCGTAAACCGAGTAGGGAAGCTCTCATTGATTGATCTTGCTGGGTCAGAGAGGGCACTTGCCACAGATCAGAGGACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTTGCTCTAAGTAGTTGCATCAATGCCCTTGTGGAAGGAAAGAAACACATACCTTATAGGAATTCAAAACTCACACAACTTCTGAAGGACTCATTAGGAGGAGCTTGTAATACTGTGATGATTGCAAATATTAGCCCAAGCAACCTATCATTTGGTGAAACCCAAAATACACTTCATTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAGCAAATGAGGAGATAATGAAGGCACCGGAATCTGATTCAGACCAGGCGAAACTACTGCTTGAATTGCAGAAAGAAAATCGTGAATTGCGTGTGCAGTTGGCTCGCCAGCAACAGAAGTTACTTACATTACAGGCACAATCTCTGGCTGCAGTTGCTTCTCCAACCCCATCTTCGGCCACATCTCTTCTAACCCCTCCAACATCTGTTCACCAAAATGAAAAACGAAAACCAAGATCATCCTTCTTGAATGGGAACTGTTTCACACCAGAATCTAGAAAGAAGGGAGCAGAGGAAGGAGTTAGAGAGCTTCGCCGCACAGTGAAACAATTAGAAGCAGAACTTGAGAAGACAAAGAAAGAGCACGTTGTGCAGTTGAAGCACAAAGATGATCTTATCAATGAGCTCTTGAAGAAAAGTGAAAAAACAGCAGCATTGGTGAGAGGAGAAAGGGTAAAGAGGGTAGAGACAAGAACCAGCTTAAGACCAAAGGAGCCAAGCATAGGTGAACTGAAGAGCCCAAGCCACCGTTTCAAATCACCAGCTCCAACAGCTAAGAAACGAAGCTTTTGGGACATAACAACAACTAATAGCCCATCTGTTGCCACAATAAATGGAAGGAAGACAAGAAGTCATGTACTTGCAGAGCCTCCTCCTACTGCTGCTCCCTCTATGCTTCGGCAGCCGGGTTTTGCTCGACAGAAACCATAG 2283 44.72 MPVSTRSQIMIDGQMDQIPGQEDKQQLNLPPRNLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEDLRFTTHPSVELNGSCKKEEKEPKLENVMRENAMPNSTVTRTYVLPQPPMADAKENVVVGTDRIVGFSCSKKASLSTNVARKLSLGNPMPLVEMKENVGCKKLQEMEELGSFSEKESLGESRILVFVRLRPMAKKEKEAGARSCVKIVNRRDLYLTEFANGNDYLRLKRLRGRHFTFDASFPDTTNQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHTVQLSYIEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRARDGGMKVVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSNLSFGETQNTLHWADRAKEIRTKVAEANEEIMKAPESDSDQAKLLLELQKENRELRVQLARQQQKLLTLQAQSLAAVASPTPSSATSLLTPPTSVHQNEKRKPRSSFLNGNCFTPESRKKGAEEGVRELRRTVKQLEAELEKTKKEHVVQLKHKDDLINELLKKSEKTAALVRGERVKRVETRTSLRPKEPSIGELKSPSHRFKSPAPTAKKRSFWDITTTNSPSVATINGRKTRSHVLAEPPPTAAPSMLRQPGFARQKP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26974164 26978312 + ClG42_06g0161500.10 Clacu06g1615 252263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1615 760 MobiDBLite consensus disorder prediction 580 595 - -
Clacu06g1615 760 Coils Coil 544 571 - -
Clacu06g1615 760 ProSiteProfiles Kinesin motor domain profile. 189 519 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 MobiDBLite consensus disorder prediction 681 760 - -
Clacu06g1615 760 MobiDBLite consensus disorder prediction 681 696 - -
Clacu06g1615 760 SMART kinesin_4 187 527 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 PRINTS Kinesin heavy chain signature 272 293 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 PRINTS Kinesin heavy chain signature 386 403 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 PRINTS Kinesin heavy chain signature 420 438 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 Gene3D Kinesin motor domain 181 525 IPR036961 -
Clacu06g1615 760 ProSitePatterns Kinesin motor domain signature. 419 430 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Clacu06g1615 760 Coils Coil 618 652 - -
Clacu06g1615 760 MobiDBLite consensus disorder prediction 713 731 - -
Clacu06g1615 760 FunFam Kinesin-like protein 183 524 - -
Clacu06g1615 760 Pfam Kinesin motor domain 195 519 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu06g1615 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 564 IPR027417 -
Clacu06g1615 760 PANTHER CENTROMERE PROTEIN E 187 666 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Clacu06g1615 760 MobiDBLite consensus disorder prediction 580 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1615 K26157 - - csv:101222937 1395.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1875 Clacu-Chr1:30885952 Clacu06g1615 Clacu-Chr6:26974164 7.70E-72 dispersed
Clacu06g0911 Clacu-Chr6:12020680 Clacu06g1615 Clacu-Chr6:26974164 6.50E-50 dispersed
Clacu06g1615 Clacu-Chr6:26974164 Clacu10g1860 Clacu-Chr10:32256581 1.10E-52 dispersed
Clacu06g1615 Clacu-Chr6:26974164 Clacu04g0892 Clacu-Chr4:23262941 2.90E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34