Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1618 ATGGGAGATCGGTTGATTTATCACGCCACCGGCGAGCGCGCCCTAGCCCAGCTCGATCACCTTCTTCTAGAATTCGCGGGAAGGGGCTTCGTTTGTAATTCCTCAACAACAACTCGAAAACTCATGGAATCAGACGAAGAAGATTTCATTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCTGGTACCATGCGAAGCCTCCCACACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGTAGAAGATTTCATGGAGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCAAAAGAAGGTTGGACTCCACAGTCATTTACGTCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTGAATTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGTCGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGGTTCACAGCAGTAGAGCTTGCTCGTAAACAAGCTGACAAGGAGCAACAACAGAGGCCGTCTGCCATTCCTGGACCTGTTCCTGATGAGTTAATTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCACGAGCTAATTCCCTTTATGATGCTCGAAGAGATGCACGAAAAGCATTTCTAGCATTTTCAGCTAATGATGTGAAATCGGAAATCCCCAGTTCTGAACCATTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATATTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCACGGTTTAGGTTTTGATCCTTACAAGCATGCACCGGAGTTTAGGGAAAAGAAAAGTGCACGCACAGCTGGGAATCAGGAGGGTTACAAACAAATTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGAGAGGATTGCTTCTGGCTTTGGCATTGGGGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCTGGTTATGAGTTTGAGGAAACATATATACAAGAAGACGATGAACCACCTTCTAAATTGATCACAGATGGGAAACAAAAGTTGATTGGAAAAAAACTTGAGGGTGTCTTGCCTGGATTTAGAGTTGCCTTGAAATCTGACTACCAGTTGGAGAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCGCAGCACAAATTTGTAGGGCCCCTCAATGGTGGCTATAAGCTTGCTGACACCCCTCCTGTCGAGGTTCCTCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGAGTGGCGACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAGTGGAGGAACTGGCCATGAATATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCGCGGGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCAAGCTTGGAGAAGATGACAGCTGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCTCTAAAGAGTTGAATCCACTTCCACCCGCAACTTCTGATGGTGTGCACGTCCAATACAATCTTTCGGATACATTTACTAAATCTACATCATCCGGTGGGATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCTAAGCAAGAAAGATTTGAGCATTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAACATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCAATTGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCCGAGCATTTTGTGGATTTTTTAGCCACCGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACAAAACTAGAAAGTTTAATGATGGAGAAAATGTTCCCAAAACGGGAAGAATATCAGTGGCGTCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGAAAGCCACCACCAGCTCCTAGGACGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAACCGACAAAGGTTGAGGAGCCTTTAACCCCAACACCTCATTCATTACCTCAATCGAATGCTGGAGAAAAAGACAAAGATGCATCTGAAAATGTAAATGAAAATGTAGAAGTTGAATGTGTTAATCGGCCTATTGATCTATATAAGGCTATTTTCTCTGATGAGTCAGAAGACGAAGAGAGTACATCAACTCTCAAGCAAGCCGAGGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACTCTAAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCTCCAGATCTGCCTCCATCAAAGAAAGGCCAAACTTCAGGTCCTCAGACAGAAGCTGTACCTGTAGGTGAGCAAAAGACCCATATCCTTTCAGTTGAAGATAAGTCTTATCCGAACCCATCTTCCACTGTGATTCTATCAGACCTTCGAATGACAGGCACCACGGAACTTGATCTAAATGGCAGAAAAGAAGACAATGAACTCAATCATAACTCAGCTGGAACTGGCGGTAAAATTATGGAGACCAGTTCTTCCAAGAAAACTTTGGGTAAAGTTTATGAAGAAAAGATGTATAAGGACAAGGGAGTTAGGAAGGCTAACAACAGGCGTGTTGACGACATTCATCGTGATTGTAGCAACAGCTCATCATCAGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCACAGGTATAAAAGTAGCGACTCAGAGGATAGTGGATCAAGTGATTATCGTATGAAAGAGCACTCTAGATCACGAGATAGAAAGAAAGGATCTTCTCAAGAAAAGAAGAGCCGGAGAAAACACTCAAAACATCACAAGCACAGACGTAGAGATTCTTCCCCCAGAGATCATCATCGCTCTGGAAAAGATCGTACTGCATCCGAGAGATAG 3117 43.63 MGDRLIYHATGERALAQLDHLLLEFAGRGFVCNSSTTTRKLMESDEEDFIFYGTPIEREEEINSRKKKSVADASGTMRSLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIKDSRANSLYDARRDARKAFLAFSANDVKSEIPSSEPFQEDDDIVSPQPAKGDISSSQSTPVYVINPKQDLHGLGFDPYKHAPEFREKKSARTAGNQEGYKQIFSTKNNLFGFRTERIASGFGIGALEELDVEDEDVYTSGYEFEETYIQEDDEPPSKLITDGKQKLIGKKLEGVLPGFRVALKSDYQLERFDPPVIPKDFIPQHKFVGPLNGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLSGGTGHEYYSRKLWEEQLKRGDQPKPQFDDKLSPSLEKMTAESRGKILGEKPLARSSKELNPLPPATSDGVHVQYNLSDTFTKSTSSGGMPEVVKPFKDDPAKQERFEHFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLESLMMEKMFPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRTRSKLDTLIFTSNSVKPTKVEEPLTPTPHSLPQSNAGEKDKDASENVNENVEVECVNRPIDLYKAIFSDESEDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTSGPQTEAVPVGEQKTHILSVEDKSYPNPSSTVILSDLRMTGTTELDLNGRKEDNELNHNSAGTGGKIMETSSSKKTLGKVYEEKMYKDKGVRKANNRRVDDIHRDCSNSSSSEDEKRRKRSRRHRYKSSDSEDSGSSDYRMKEHSRSRDRKKGSSQEKKSRRKHSKHHKHRRRDSSPRDHHRSGKDRTASER 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26990990 27002000 + ClG42_06g0161800.10 Clacu06g1618 252266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 249 278 - -
Clacu06g1618 1038 ProSiteProfiles SURP motif repeat profile. 454 498 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 890 920 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 904 920 - -
Clacu06g1618 1038 Pfam Protein of unknown function (DUF1604) 80 160 IPR011666 GO:0006397(InterPro)
Clacu06g1618 1038 Gene3D Surp module 433 506 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Clacu06g1618 1038 Pfam Surp module 454 501 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 934 963 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 505 557 - -
Clacu06g1618 1038 SUPERFAMILY Surp module (SWAP domain) 433 503 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 972 1000 - -
Clacu06g1618 1038 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 42 1019 - GO:0003723(PANTHER)|GO:0005634(PANTHER)
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 1001 1024 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 505 539 - -
Clacu06g1618 1038 FunFam G patch domain-containing protein TGH 418 508 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 785 804 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 830 857 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 733 764 - -
Clacu06g1618 1038 MobiDBLite consensus disorder prediction 934 1038 - -
Clacu06g1618 1038 SMART surpneu2 452 504 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1618 K13123 - - csv:101222702 1704.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33