Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g1644 | ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGGATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCGTACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA | 975 | 52.21 | MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27233471 | 27234445 | + | ClG42_06g0164400.10 | Clacu06g1644 | 252292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g1644 | 324 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Clacu06g1644 | 324 | MobiDBLite | consensus disorder prediction | 81 | 131 | - | - | |
Clacu06g1644 | 324 | Pfam | Dof domain, zinc finger | 35 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu06g1644 | 324 | ProSiteProfiles | Zinc finger Dof-type profile. | 37 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu06g1644 | 324 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 29 | 203 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu06g1644 | 324 | ProSitePatterns | Zinc finger Dof-type signature. | 39 | 75 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g1644 | Clacu-Chr6:27233471 | Clacu10g0834 | Clacu-Chr10:15262536 | 9.20E-28 | dispersed | |
Clacu06g1644 | Clacu-Chr6:27233471 | Clacu03g0249 | Clacu-Chr3:2904109 | 6.40E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47932 | PF02701 | zf-Dof | 4.40E-33 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g1644 | - | - | - | 0.0 |