Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1652 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAGCGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCCTCAAGGAACAGCATTGACAGCGACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTCAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGTCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCCCTTTCCATGACAATGGACCAAATGCATCTACCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGGTGTGAATTCCAGTTCTCGTTCTTACTTTCACAACCCCTCATTAGGCAGTGAATACTTCAGTGTTTTTAGTGCAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCACTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGGTTGTACCCTTGGTCCCATATCAACACCTGACACAAGTGATGCAGTAAATTTGGAAATTACAAATCGGATTTTCCATGGATCAAATTTGACAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1620 41.98 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRPQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASTTNMFKENSNQYPLSVGGVNSSSRSYFHNPSLGSEYFSVFSAASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEGCTLGPISTPDTSDAVNLEITNRIFHGSNLTDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27297683 27304767 + ClG42_06g0165200.10 Clacu06g1652 252300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1652 539 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1652 539 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1652 539 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Clacu06g1652 539 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Clacu06g1652 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 454 IPR044817 GO:0003677(InterPro)
Clacu06g1652 539 MobiDBLite consensus disorder prediction 1 24 - -
Clacu06g1652 539 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0298 Clacu-Chr6:3657586 Clacu06g1652 Clacu-Chr6:27297683 2.90E-28 dispersed
Clacu06g1652 Clacu-Chr6:27297683 Clacu06g1900 Clacu-Chr6:29396708 1.70E-34 dispersed
Clacu05g0660 Clacu-Chr5:5487472 Clacu06g1652 Clacu-Chr6:27297683 1.10E-18 transposed
Clacu10g1725 Clacu-Chr10:30777776 Clacu06g1652 Clacu-Chr6:27297683 6.00E-34 transposed
Clacu11g2095 Clacu-Chr11:31730563 Clacu06g1652 Clacu-Chr6:27297683 6.50E-30 transposed
Clacu04g1220 Clacu-Chr4:26372518 Clacu06g1652 Clacu-Chr6:27297683 8.20E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47933 PF03110 SBP 1.10E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1652 - - - 0.0