Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1652 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAGCGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCTGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCCTCAAGGAACAGCATTGACAGCGACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTCAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGTCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCCCTTTCCATGACAATGGACCAAATGCATCTACCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGGTGTGAATTCCAGTTCTCGTTCTTACTTTCACAACCCCTCATTAGGCAGTGAATACTTCAGTGTTTTTAGTGCAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCACTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGGTTGTACCCTTGGTCCCATATCAACACCTGACACAAGTGATGCAGTAAATTTGGAAATTACAAATCGGATTTTCCATGGATCAAATTTGACAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1620 41.98 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRPQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPPFHDNGPNASTTNMFKENSNQYPLSVGGVNSSSRSYFHNPSLGSEYFSVFSAASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEGCTLGPISTPDTSDAVNLEITNRIFHGSNLTDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27297683 27304767 + ClG42_06g0165200.10 Clacu06g1652 252300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1652 539 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1652 539 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu06g1652 539 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Clacu06g1652 539 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Clacu06g1652 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 454 IPR044817 GO:0003677(InterPro)
Clacu06g1652 539 MobiDBLite consensus disorder prediction 1 24 - -
Clacu06g1652 539 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1652 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0298 Clacu-Chr6:3657586 Clacu06g1652 Clacu-Chr6:27297683 2.90E-28 dispersed
Clacu06g1652 Clacu-Chr6:27297683 Clacu06g1900 Clacu-Chr6:29396708 1.70E-34 dispersed
Clacu05g0660 Clacu-Chr5:5487472 Clacu06g1652 Clacu-Chr6:27297683 1.10E-18 transposed
Clacu10g1725 Clacu-Chr10:30777776 Clacu06g1652 Clacu-Chr6:27297683 6.00E-34 transposed
Clacu11g2095 Clacu-Chr11:31730563 Clacu06g1652 Clacu-Chr6:27297683 6.50E-30 transposed
Clacu04g1220 Clacu-Chr4:26372518 Clacu06g1652 Clacu-Chr6:27297683 8.20E-162 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1180 . 181 1009 SBP-box Gene Family AT2G47070 55.2 2.3e-239 825.5
Clacu10g1180 . 25 1009 SBP-box Gene Family AT3G60030 54.2 3.9e-273 937.9
Clacu06g0211 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Clacu06g1652 . 152 292 SBP-box Gene Family AT1G69170 60.3 3.1e-41 166.4
Clacu10g1180 . 181 1009 SBP-box Gene Family AT2G47070 55.2 2.3e-239 825.5
Clacu06g1652 . 152 292 SBP-box Gene Family AT1G69170 60.3 3.1e-41 166.4
Clacu10g1180 . 25 1009 SBP-box Gene Family AT3G60030 54.2 3.9e-273 937.9
Clacu06g0211 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.8e-39 158.7
Clacu06g0211 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47933 PF03110 SBP 1.10E-31 No_clan Clacu TF