Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1654 ATGGAAGTTAATACCTACAATGATCCATTACACAAAATTCTCTTTAAATGGGAATGTTACTCGCCTCGACAGCAAAAGATTGCACTCTTAGCACTTCTGATCTTTACAGCTTTCTATTCAACTCGGGCATACGATCCATTGGATCCAAATGGAAACCTAACAATCAAATGGGATGTAGTCTCCTGGACGCCAGACGGATATGTAGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCGTGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGAGCTCAGACAACGGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTCCCTCACTGTTGCAAGAAAAGCCCAGTAGTTGTTGATTTGCTTCCTGGTGTTCCTTACAATCAACAATTCTCCAATTGCTGCAAGGGTGGAGTATTGGCATCCTGGGGACAGGATCCAGCAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTAAAATTGCCAAAGAACTTCACTTTGCTCGGTCCAGGACCAGGATACACATGTGGACCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCCAAGAACCCAACTTGCTGTGTATCACTCTCAACTTTCTACAATGATACAATCACTTCTTGCCCAACGTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTACTGCACAAGGATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTAGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGCGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGTTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTCATGAAGAAGGACAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCGCCAGAATCATACCCATTTCTACCCAACTCTGCGCCTGGAGGCTCCGGTGCAGTTACCAAATTAACCACCTCCTTGCTTTTGATACTCTGGTTTTTGTGGTGA 1371 43.91 MEVNTYNDPLHKILFKWECYSPRQQKIALLALLIFTAFYSTRAYDPLDPNGNLTIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKSPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSGAVTKLTTSLLLILWFLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27315643 27318028 + ClG42_06g0165400.10 Clacu06g1654 252302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1654 456 PIRSF COBRA 15 456 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu06g1654 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu06g1654 456 PANTHER PROTEIN COBRA 32 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1654 Clacu-Chr6:27315643 Clacu07g1606 Clacu-Chr7:30627999 1.20E-222 dispersed
Clacu06g1654 Clacu-Chr6:27315643 Clacu06g1655 Clacu-Chr6:27318699 1.90E-188 tandem
Clacu05g1625 Clacu-Chr5:23680816 Clacu06g1654 Clacu-Chr6:27315643 3.90E-35 transposed
Clacu04g1222 Clacu-Chr4:26388732 Clacu06g1654 Clacu-Chr6:27315643 2.30E-164 wgd
Clacu05g1104 Clacu-Chr5:9973896 Clacu06g1654 Clacu-Chr6:27315643 5.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1654 - - - 0.0