Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1655 ATGAGGTCTCGGCGTTTCGCTTCCACCGGATCCGTCGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCCGGCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTTAGACTTCCTAAAAACTTCACGCTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAACCAACCAAATTTGTATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTGGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCAACAATGCACCCTTGGTTCAGTGCACCAGCCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTTAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCACCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCATTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAAGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTCATGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 43.93 MRSRRFASTGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLMTILISLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27318699 27321422 - ClG42_06g0165500.10 Clacu06g1655 252303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1655 455 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu06g1655 455 PANTHER PROTEIN COBRA 25 447 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Clacu06g1655 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1655 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1104 Clacu-Chr5:9973896 Clacu06g1655 Clacu-Chr6:27318699 2.20E-138 dispersed
Clacu06g1655 Clacu-Chr6:27318699 Clacu07g1605 Clacu-Chr7:30624564 1.60E-219 dispersed
Clacu06g1654 Clacu-Chr6:27315643 Clacu06g1655 Clacu-Chr6:27318699 1.90E-188 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1655 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Clacu07g1605 . 44 450 COBRA Gene Family AT5G60920 75.4 3.3e-200 694.5
Clacu06g1654 . 55 452 COBRA Gene Family AT5G60920 69.1 6.6e-180 627.1
Clacu07g1606 . 31 426 COBRA Gene Family AT5G60920 68.2 1.5e-179 625.9
Clacu04g1222 . 37 437 COBRA Gene Family AT5G60920 60.0 7.6e-152 533.9
Clacu05g1104 . 31 425 COBRA Gene Family AT5G60920 54.5 1.3e-130 463.4
Clacu06g1655 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Clacu07g1605 . 19 448 COBRA Gene Family AT3G02210 74.2 1.8e-202 702.2
Clacu07g1606 . 5 429 COBRA Gene Family AT3G02210 66.8 3.3e-180 628.2
Clacu06g1654 . 27 452 COBRA Gene Family AT3G02210 66.1 6.1e-179 624.0
Clacu04g1222 . 11 430 COBRA Gene Family AT3G02210 58.7 3.1e-154 542.0
Clacu05g1104 . 1 420 COBRA Gene Family AT3G02210 55.0 1.3e-139 493.4
Clacu06g1655 . 21 446 COBRA Gene Family AT3G29810 75.0 3.9e-202 701.0
Clacu07g1605 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Clacu07g1606 . 14 428 COBRA Gene Family AT3G29810 66.0 6.2e-176 614.0
Clacu06g1654 . 38 436 COBRA Gene Family AT3G29810 66.7 1.5e-174 609.4
Clacu04g1222 . 25 435 COBRA Gene Family AT3G29810 58.6 1.4e-151 533.1
Clacu05g1104 . 13 430 COBRA Gene Family AT3G29810 55.1 7.2e-140 494.2
Clacu02g0457 . 616 1026 COBRA Gene Family AT3G29810 50.1 2.2e-120 429.5
Clacu06g1654 . 32 363 COBRA Gene Family AT5G15630 83.1 3.9e-178 620.9
Clacu07g1606 . 9 339 COBRA Gene Family AT5G15630 82.5 1.6e-176 615.5
Clacu06g1655 . 31 361 COBRA Gene Family AT5G15630 73.2 1.6e-150 529.3
Clacu07g1605 . 29 358 COBRA Gene Family AT5G15630 68.5 7.5e-145 510.4
Clacu04g1222 . 15 341 COBRA Gene Family AT5G15630 62.1 1.3e-133 473.0
Clacu05g1104 . 19 341 COBRA Gene Family AT5G15630 50.3 7.6e-97 350.9
Clacu06g1655 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Clacu07g1605 . 27 220 COBRA Gene Family AT5G60950 60.0 5.1e-64 241.1
Clacu07g1606 . 27 207 COBRA Gene Family AT5G60950 57.5 1.9e-58 222.6
Clacu06g1654 . 51 231 COBRA Gene Family AT5G60950 57.5 4.2e-58 221.5
Clacu04g1222 . 33 213 COBRA Gene Family AT5G60950 51.9 1.0e-48 190.3
Clacu05g1104 . 12 413 COBRA Gene Family AT1G09790 60.2 6.9e-151 530.8
Clacu07g1605 . 25 428 COBRA Gene Family AT1G09790 54.0 2.6e-134 475.7
Clacu06g1654 . 41 434 COBRA Gene Family AT1G09790 53.4 2.9e-133 472.2
Clacu06g1655 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Clacu07g1606 . 3 410 COBRA Gene Family AT1G09790 51.1 9.7e-129 457.2
Clacu05g0739 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Clacu10g0543 . 59 667 COBRA Gene Family AT4G16120 54.2 7.3e-205 710.7
Clacu05g1625 . 1 469 COBRA Gene Family AT4G16120 55.5 1.8e-163 573.2
Clacu05g0739 . 11 649 COBRA Gene Family AT3G16860 63.1 3.0e-243 838.2
Clacu10g0543 . 59 656 COBRA Gene Family AT3G16860 52.8 8.8e-195 677.2
Clacu05g1625 . 1 454 COBRA Gene Family AT3G16860 53.7 1.0e-150 530.8
Clacu05g0739 . 7 639 COBRA Gene Family AT5G49270 61.0 7.0e-240 827.0
Clacu10g0543 . 59 654 COBRA Gene Family AT5G49270 52.0 3.3e-197 685.3
Clacu05g1625 . 4 449 COBRA Gene Family AT5G49270 53.9 2.9e-153 539.3
Clacu10g0543 . 55 674 COBRA Gene Family AT3G20580 62.6 1.1e-248 856.3
Clacu05g0739 . 27 627 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Clacu05g1625 . 1 469 COBRA Gene Family AT3G20580 64.5 2.0e-197 686.0
Clacu05g1626 . 22 172 COBRA Gene Family AT3G20580 53.0 2.9e-44 177.2
Clacu10g0543 . 59 675 COBRA Gene Family AT4G27110 63.1 2.0e-242 835.5
Clacu05g0739 . 24 645 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
Clacu05g1625 . 1 460 COBRA Gene Family AT4G27110 63.9 3.8e-185 645.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73