Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1669 ATGGCGGCTCACTCCTCAACTTCCAGTAACGACCGACCTTTGACAACCGCAACTTCTAATCAGTTCTTTGCATGGAGGGAGTTTTTATGGGGAGCTATCGCTGGAGCATTTGGAGAAGGAATGATGCACCCTATTGATACCATAAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGAAGTCAAAATCAAAAGAGCCTCTTGCAGATGGTTCAATCAGTATGGAAAATTGACGGATTGAGGGGCTTTTATAGGGGCATAGCTCCTGGAATTACTGGTTCACTTGCCACTGGAGCTACATACTTTGGTGTTATTGAGTCCAGTAAGAAATGGATTGAAGAAACACATCCTAGACTTGGCGGTCATTGGGCTCATTTCATTGCTGGAGCAGTTGGTGATACACTGGGTTCATTTGTGTACGTTCCATGTGAAGTTATGAAGCAACGAATGCAAGTTCAAGGCACAAGGTCGTCTTGGAGTTCCCTTCCCATGAAGGATAGTATCTCTATGAATCATGGTGGGCAAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCATTCAATCCTGAAGGAACAAGGATTAAGAGGATTATATGCGGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTATGAGGCGCTTAAAGATTTCACTGAGTATGGGAAGCAAAGATGGATGCCTAATTCAGATGTTAATAGCTCCTTGGAAGGACTTGTGTTGGGGGGATTAGCTGGTGGTATCAGTGCTTATCTGACGACTCCCTTGGATGTTGTAAAAACAAGAATGCAAGTTCAGGGATCAACTTTGAGGTATAACGGCTGGTTGGATGCGGTGAGAACTATCTGGCGGAGTGAAGGAACAAAGGGAATGTTTAGGGGTAGCATACCCAGAATCACATGGTATATTCCAGCTTCTGCCCTAACTTTTATGGCTGTGGAATTTCTGAGAGACCATTTCAACGAAAGATTGGATGATGAATCCAAAAAAGAAGCTGCTTCTTTATCAGGTGATAGAAAAGGAACATTGCGAGAAACGGCATTAACTGCTCGAGACTGA 1086 43.92 MAAHSSTSSNDRPLTTATSNQFFAWREFLWGAIAGAFGEGMMHPIDTIKTRIQSQAILYGSQNQKSLLQMVQSVWKIDGLRGFYRGIAPGITGSLATGATYFGVIESSKKWIEETHPRLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTRSSWSSLPMKDSISMNHGGQMYGYYSGMFQAGHSILKEQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDFTEYGKQRWMPNSDVNSSLEGLVLGGLAGGISAYLTTPLDVVKTRMQVQGSTLRYNGWLDAVRTIWRSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDDESKKEAASLSGDRKGTLRETALTARD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27459671 27463180 + ClG42_06g0166900.10 Clacu06g1669 252317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1669 361 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085(InterPro)
Clacu06g1669 361 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085(InterPro)
Clacu06g1669 361 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085(InterPro)
Clacu06g1669 361 PRINTS Mitochondrial carrier protein signature 251 273 IPR002067 GO:0055085(InterPro)
Clacu06g1669 361 Gene3D Mitochondrial carrier domain 3 167 IPR023395 -
Clacu06g1669 361 FunFam Mitochondrial substrate carrier family protein 6 166 - -
Clacu06g1669 361 Gene3D Mitochondrial carrier domain 168 350 IPR023395 -
Clacu06g1669 361 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 13 339 - -
Clacu06g1669 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Clacu06g1669 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Clacu06g1669 361 SUPERFAMILY Mitochondrial carrier 23 325 IPR023395 -
Clacu06g1669 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 242 328 IPR018108 -
Clacu06g1669 361 MobiDBLite consensus disorder prediction 336 361 - -
Clacu06g1669 361 FunFam Mitochondrial substrate carrier family protein 168 345 - -
Clacu06g1669 361 Pfam Mitochondrial carrier protein 23 113 IPR018108 -
Clacu06g1669 361 Pfam Mitochondrial carrier protein 123 228 IPR018108 -
Clacu06g1669 361 Pfam Mitochondrial carrier protein 243 331 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1669 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0103 Clacu-Chr2:1114344 Clacu06g1669 Clacu-Chr6:27459671 9.90E-32 dispersed
Clacu04g0732 Clacu-Chr4:21567128 Clacu06g1669 Clacu-Chr6:27459671 3.00E-28 dispersed
Clacu05g2278 Clacu-Chr5:31139710 Clacu06g1669 Clacu-Chr6:27459671 1.30E-29 dispersed
Clacu06g1669 Clacu-Chr6:27459671 Clacu08g0812 Clacu-Chr8:18161369 2.10E-33 dispersed
Clacu06g1669 Clacu-Chr6:27459671 Clacu08g0880 Clacu-Chr8:18858415 1.90E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33