Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1681 ATGAACAACCCCTTCGTCTTCAACTGCATTTACAAGTTGCTTTCTCAAAACGTGTTGAACCTCACTTTCCAGCTTTCAAAATCTGACTTTGCTTTGCTTTGCTTGGTGAAAGTTGCACAGAAAAATTACTCTCCCAACTTGACTATCTTCTTCACCAGTCAACATAACCCATTCAGGCTCCAACTGAGGAAAATGGTGAAGATCTGCTGCCTTGGAGCTGGGTATGTTGGTGGCCCTACGATGGCAGTGATAGCATTAAAATGCCCCACAATTGAAGTAGCAGTTGTTGATATCTCAGTCTCCAAGATCTTAGCTTGGAATAGTGACCAACTCCCCATATATGAGCCTGGTCTTGATGAAGTAGTGAAGCAGTGCAGAGGAAAGAATCTATTTTTCAGCACAGATGTTGAAAGGCACATCTCAGAGGCTGACATAATCTTTGTTTCAGTAAACACTCCAACGAAAACTCGAGGCCTTGGAGCTGGCAAAGCTGCAGATCTCACATATTGGGAGAGTGCAGCCCGAATGATTGCTGATGTATCAAAATCAGACAAGATTGTTGTTGAAAAATCAACTGTTCCAGTTAAAACAGCAGAGGCAATAGAAAAAATCCTTACTCACAATAGCAAGGGAATCAAATATCAGATTCTCTCAAATCCAGAGTTCCTGGCTGAGGGTACTGCTATTAGAGATTTATTTAACCCCGACCGGGTTCTCATAGGAGGGAGAGAAACTCCGGACGGTCTCAAGGCAATTCAGGCTTTGAAGAGTGTATATGCTCAATGGGTGCCTGAAGAAAGAATTCTCACCACTAATCTGTGGTCAGCAGAGCTCTCAAAGTTAGCTGCTAACGCATTTCTGGCCCAAAGGATCTCATCTATCAATGCCATGTCCGCACTCTGTGAGGCTACTGGTGCAGACGTGTCACAGGTATCCCACGCCATTGGAACAGATACTAGAATTGGACCCAAGTTCCTAAATGCTAGTGTTGGTTTTGGTGGATCATGTTTTCAGAAGGACATTCTCAATTTGATTTATATTTGTGAATGCAATGGCTTGAATGAAGTTGCAAGCTACTGGAAACAAGTGATAAAGGTCAACGACTACCAAAAGAATCGATTTGTGAACCGGGTTGTCTCTTCAATGTTCAATACAGTTTCAGGCAAAAAGATAGCAATCCTTGGCTTTGCTTTCAAGAAGGATACAGGTGACACAAGGGAAACTCCTGCAATCGATGTCTGCAAGGGACTTTTAGGGGACAAGGCAAAACTGAGTGTATATGATCCACAAGTAACTGAGGATCAGATTCAGAGGGACTTATCAATGAGCAAGTTTGATTGGGACCATCCAATCCACTTGCAGCCAGTGAGCCCAACTGCGGCAAAGGAAGTCAGTTTTGCTTGGGACCCATATGAGGCGACTAAAGATGCTCATGGAGTCTGCATTCTAACTGAATGGGATGAGTTCAAGACTCTTGATTTTCAAAGGATTTTTAAACAGATGCAGAAACCTGCATTTGTTTTTGATGGCAGAAATGTTGTTGATGTTCAAAAGCTGAGGGAGATTGGATTCATAGTGTATTCCATTGGAAAACCACTGGATCCATGGCTCAAGGATATGCCCGTTATGGCATAG 1635 43.0 MNNPFVFNCIYKLLSQNVLNLTFQLSKSDFALLCLVKVAQKNYSPNLTIFFTSQHNPFRLQLRKMVKICCLGAGYVGGPTMAVIALKCPTIEVAVVDISVSKILAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVERHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLAEGTAIRDLFNPDRVLIGGRETPDGLKAIQALKSVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSINAMSALCEATGADVSQVSHAIGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLNEVASYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSVYDPQVTEDQIQRDLSMSKFDWDHPIHLQPVSPTAAKEVSFAWDPYEATKDAHGVCILTEWDEFKTLDFQRIFKQMQKPAFVFDGRNVVDVQKLREIGFIVYSIGKPLDPWLKDMPVMA 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27539600 27542844 - ClG42_06g0168100.10 Clacu06g1681 252329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1681 544 PIRSF UDPglc_GDPman_dh 66 531 IPR017476 GO:0016616(InterPro)
Clacu06g1681 544 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 392 515 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Clacu06g1681 544 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 274 373 IPR008927 -
Clacu06g1681 544 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 274 368 IPR014026 GO:0016616(InterPro)|GO:0051287(InterPro)
Clacu06g1681 544 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 66 534 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Clacu06g1681 544 Gene3D - 305 540 - -
Clacu06g1681 544 Gene3D - 273 304 - -
Clacu06g1681 544 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 278 IPR036291 -
Clacu06g1681 544 Gene3D - 61 272 - -
Clacu06g1681 544 SMART UDPG_MGDP_dh_C_a_2_a 392 516 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Clacu06g1681 544 FunFam UDP-glucose 6-dehydrogenase 305 542 - -
Clacu06g1681 544 FunFam UDP-glucose 6-dehydrogenase 273 304 - -
Clacu06g1681 544 PIRSF UDPglc_DH_euk 60 543 IPR028356 GO:0003979(InterPro)
Clacu06g1681 544 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 379 527 IPR036220 -
Clacu06g1681 544 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 67 248 IPR001732 GO:0016616(InterPro)|GO:0051287(InterPro)
Clacu06g1681 544 FunFam UDP-glucose 6-dehydrogenase 64 272 - -
Clacu06g1681 544 NCBIfam nucleotide sugar dehydrogenase 67 512 IPR017476 GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1681 K00012 - - csv:101206505 949.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1681 Clacu-Chr6:27539600 Clacu07g0728 Clacu-Chr7:16358947 2.20E-252 dispersed
Clacu06g1681 Clacu-Chr6:27539600 Clacu06g1683 Clacu-Chr6:27548855 3.60E-274 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g626 . . . . . . . . . . Cma10g00227 . Car10g00212 . . . . . . . . . . . Cla06g01552 Cam06g1713 Cec06g1774 Cco06g1775 Clacu06g1681 Cmu06g1626 Cre06g2439 . . Cone2ag0525 Cone16ag0488 . . . . . . . . . . . . . Cmo10g00238 . . . . . . Cpe18g00766 . . . . . . . . . . . . . . Lsi06g01426 Csa01g00279 Chy02g02454 Cme02g01842
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95