Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1704 ATGGGAGGAGAATTTTCTAGGGCTCCAAACCCTCGAATTCCTTTCTCCTCCCTTCTCCTCCTCCTCCTCTCTCTCTGCCTCTCCGCCGCTCTCTCCGCCGCCCAAACCCCCTCATTCCGTTCCTTCTCCCCTCGCGACGCTTATTTGATCAACTGCGGCTCCCCGGCCCAAACCCGTCTCGACGACGGTCGGATTTTCAAATCCGATCGCGAATCCACTTCTCTCCTTTCCACCGAAGAAGACGTTCAGATTTCCGTCGATTCCATTCCCTCAAACGCCGCTGTTTCGCCTCTCTCTTCTTGGTCATTACCTCTATTTCGCTCCGCTAGAATTTTCCCCGACGATTCCACCTACACTTTCTTCATTTCTCAGCCCGGCCGCCATTGGATCCGCCTCTACTTTTACCCTCTTCCTCACCCTAATTACAATCTCTCCGATTCCGTTTTCACCGTCACCACCGATACCTTCGTTCTCCTCCATGATTTCTCAATCAAACCCAATCCAAAAATCGTCTTCAAGGAATACCTAATCAACATTACCACCGATCGATTCTCCCTCCAGTTCAAACCTAAGAAGAATTCCTTCGCCTTCGTCAATGCCATTGAAATCGTCTCCGCTCCAGATCCTCTGTTTTCCGATTCCGCCAACTCTGTTTCTCCGGTGGGATTTTTCAACGGATTGTCGAACATTGCTCTGCAAATTTGCTACCGTGTTAATGTGGGTGGCCCTGAACTTGTTCCTAAAAACGATACGCTGTCAAGAACATGGGAAACGGATTATGCTTACAACAAATTTCCACAGGGTTCTAAAAATGTTTCTGTGGCTTTGAACTCCATTAGATACCCTGGAGATGAAGTGACTCCATTAATTGCTCCTAATTGGGTTTATGCAACTGCAGAGGATCTCCAAGATCCTGAAACGATTCAAGTAAATTTCAATATGAGTTGGAGTTTCAATGTGGAACCGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCAAAGTCCTCAACAGTTTGTACTTCAATGTCTACATCAATGGGATGATGGGTATTGCAGATCTTGATCTTTCTCAACTCACTGGTGATCTTTCCACTCCATACTATAGAGACCTTGTTCTCAATGCCTCTGACATCAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAATTTGGATTCAGGGCTTCAAGATGCGATTCTGAATGGAGTGGAAATCATGAAGATGAGTAACGATGCACAAAGCTTGGATGGTTTGTTTTCAGTGGATGGGACATACATGGGAGGCTCAAGATTTAGCACAATGAAGATTGTAGCCGCTGTAGCACTTGGAATGGCAGCCATTGCCATTGTATTTGTTGGAATAATGTTCTTGAGATGGCAAAAAAGGCCTCAGGGATGGGAGAAGAGAAACAGTTTCTCTTCATGGCTTCTTCCTTTGAATTCAACTCACACTGCCAGTTTCTTCTCTTCAAAAAGCAGCTCCAGAAGATCATCAACCGTTTTTAGCTCTCGAAGGAGCAGGACTGGCCTCTCAGCCATTTACTCCAATGTCGGTCTTGGCCGTTTCTTCTCCCTCAACGAGTTACAGGCTGCTACCCAGAACTTCGAGGAGAAAGCAGTGATCGGCGTTGGTGGATTCGGCAAAGTCTACGTCGGAGCGTTAGAAGATGGAACCAAAGTCGCCATTAAACGTGGAAACCCCAGTTCTGATCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTGTCCAAACTCCGCCATCGCCATCTCGTTTCTCTAATCGGTTACTGCGACGAGCAATCCGAGATGATTCTGGTTTACGAGTACATGGCCAATGGCCCATTTCGCGACCACTTGTATGGCTCTAATCTCCCTCCTTTGTCTTGGAAACAGAGGCTCGAAATCTGTATCGGCGCTGCCCGTGGCCTTCACTATCTCCACACTGGTGCGGCTCAGGGCATAATCCACCGTGATGTCAAGACCACTAACATTCTTCTTGATGAAAATTTTGTTGCCAAAGTTGCTGATTTTGGGCTTTCCAAAGCTGCGCCATCTTTGGAACAGACCCATGTGAGCACTGCAGTCAAGGGAAGTTTTGGTTACCTTGATCCTGAGTACTTCAGAAGACAGCAACTCACTGAGAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGTGCAAGACAAGTCATCAATCCCACATTGCCGCGTGAGCAGGTAAATTTGGCGGAGTGGGCAATGCAAAATTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTCAAATTAGCAGCTCAATTGTAGAGGGGTCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGTTGATAGACCAAGCATGGGAGATGTGCTATGGAACTTAGAATACGCTTTGCAGCTACAAGAGGCTGTATCAGAGCTCGAGGACCCTGAGGAAGACAAATGCGAAGGCCTTGTGGCTTTAGACAAACCAAATGACAATGAACCAAAAGGAGGTACAAGTGCTTCTGTAAGTGATGATATTTCTGAAGTTTCAGTTAGTGCTCCTTTGTTTTCAGAAGTTCAAAATTTTCAGGGAAGATAA 2631 45.88 MGGEFSRAPNPRIPFSSLLLLLLSLCLSAALSAAQTPSFRSFSPRDAYLINCGSPAQTRLDDGRIFKSDRESTSLLSTEEDVQISVDSIPSNAAVSPLSSWSLPLFRSARIFPDDSTYTFFISQPGRHWIRLYFYPLPHPNYNLSDSVFTVTTDTFVLLHDFSIKPNPKIVFKEYLINITTDRFSLQFKPKKNSFAFVNAIEIVSAPDPLFSDSANSVSPVGFFNGLSNIALQICYRVNVGGPELVPKNDTLSRTWETDYAYNKFPQGSKNVSVALNSIRYPGDEVTPLIAPNWVYATAEDLQDPETIQVNFNMSWSFNVEPSYSYLIRLHFCDIVSKVLNSLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNLDSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGSRFSTMKIVAAVALGMAAIAIVFVGIMFLRWQKRPQGWEKRNSFSSWLLPLNSTHTASFFSSKSSSRRSSTVFSSRRSRTGLSAIYSNVGLGRFFSLNELQAATQNFEEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMQNYRKGKLEKIIDPQISSSIVEGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLVALDKPNDNEPKGGTSASVSDDISEVSVSAPLFSEVQNFQGR 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27730325 27736349 - ClG42_06g0170400.10 Clacu06g1704 252352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1704 876 Pfam Malectin-like domain 50 412 IPR024788 -
Clacu06g1704 876 SMART serkin_6 540 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1704 876 PANTHER OS07G0166700 PROTEIN 528 818 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Clacu06g1704 876 Pfam Protein tyrosine and serine/threonine kinase 543 802 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1704 876 ProSitePatterns Protein kinases ATP-binding region signature. 546 568 IPR017441 GO:0005524(InterPro)
Clacu06g1704 876 ProSiteProfiles Protein kinase domain profile. 540 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1704 876 MobiDBLite consensus disorder prediction 836 857 - -
Clacu06g1704 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1704 876 FunFam Receptor-like protein kinase FERONIA 231 415 - -
Clacu06g1704 876 FunFam Receptor-like protein kinase FERONIA 616 830 - -
Clacu06g1704 876 CDD STKc_IRAK 546 811 - -
Clacu06g1704 876 Gene3D Phosphorylase Kinase; domain 1 502 615 - -
Clacu06g1704 876 Gene3D - 230 416 - -
Clacu06g1704 876 Gene3D - 46 207 - -
Clacu06g1704 876 FunFam Putative receptor-like protein kinase 47 207 - -
Clacu06g1704 876 SUPERFAMILY Protein kinase-like (PK-like) 514 811 IPR011009 -
Clacu06g1704 876 Gene3D Transferase(Phosphotransferase) domain 1 616 833 - -
Clacu06g1704 876 FunFam receptor-like protein kinase FERONIA 502 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2599 Clacu-Chr1:36259009 Clacu06g1704 Clacu-Chr6:27730325 2.00E-178 dispersed
Clacu02g2117 Clacu-Chr2:34298474 Clacu06g1704 Clacu-Chr6:27730325 1.40E-216 dispersed
Clacu06g1244 Clacu-Chr6:23300765 Clacu06g1704 Clacu-Chr6:27730325 2.90E-63 dispersed
Clacu06g1704 Clacu-Chr6:27730325 Clacu09g0229 Clacu-Chr9:2110013 2.40E-256 dispersed
Clacu11g0635 Clacu-Chr11:6037277 Clacu06g1704 Clacu-Chr6:27730325 1.40E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73666 PF12819 Malectin_like 3.10E-35 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1704 - - - 0.0