Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1720 ATGGAGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACGGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTTACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATATAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTCCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.26 MEFLGFLLVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27843631 27844535 + ClG42_06g0172000.10 Clacu06g1720 252368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1720 251 CDD DPBB_EXPA_N 28 154 - -
Clacu06g1720 251 FunFam Expansin 18 155 - -
Clacu06g1720 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Clacu06g1720 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 Gene3D - 156 251 IPR036749 -
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Clacu06g1720 251 FunFam Expansin 159 251 - -
Clacu06g1720 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Clacu06g1720 251 Gene3D - 16 155 IPR036908 -
Clacu06g1720 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Clacu06g1720 251 SMART dpbb_1 64 149 IPR007112 -
Clacu06g1720 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Clacu06g1720 251 PANTHER EXPANSIN-A15 20 251 IPR002963 GO:0009664(InterPro)
Clacu06g1720 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Clacu06g1720 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1720 Clacu-Chr6:27843631 Clacu07g0524 Clacu-Chr7:6700707 1.90E-105 dispersed
Clacu04g1275 Clacu-Chr4:26817804 Clacu06g1720 Clacu-Chr6:27843631 2.10E-93 wgd
Clacu05g2616 Clacu-Chr5:33929896 Clacu06g1720 Clacu-Chr6:27843631 2.80E-116 wgd
Clacu06g1720 Clacu-Chr6:27843631 Clacu09g1856 Clacu-Chr9:33317282 8.00E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1720 - - - 0.0