Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1721 ATGGCCACTGTCACTACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCGGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 51.12 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27847543 27848729 + ClG42_06g0172100.10 Clacu06g1721 252369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1721 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Clacu06g1721 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Clacu06g1721 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Clacu06g1721 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Clacu06g1721 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1721 Clacu-Chr6:27847543 Clacu08g1753 Clacu-Chr8:26947822 1.20E-54 dispersed
Clacu09g2087 Clacu-Chr9:35658919 Clacu06g1721 Clacu-Chr6:27847543 1.00E-39 transposed
Clacu11g1553 Clacu-Chr11:26628799 Clacu06g1721 Clacu-Chr6:27847543 1.20E-62 transposed
Clacu04g1276 Clacu-Chr4:26821382 Clacu06g1721 Clacu-Chr6:27847543 2.20E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1721 K08910 - csv:101222701 496.508