Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1725 ATGGCCTCCGTAGCTCTCAAAACCTTCACCGGCCTCCGCCAATCCTCGACGGAGAAGCCCCATTTCGTCACCCAAACGAAGGCCAACCCGAACCCCCAATTTCGGCGCCGATTTTATGTCGCCGCTGCTAAAACCAGCCCTAAAATCGCCGGCCGGAACCTCAGAGTCGCGGTGGTCGGCGGCGGTCCCGCTGGAGGATCGGCAGCCGAAACTCTCGCCAGAGGCGGCGTTGAGACTTTCTTGTTCGAGAGGAAGCTCGACAACTGCAAGCCCTGCGGTGGTGCGATTCCGCTGTGTATGGTCGGCGAGTTCGATCTCCCGTTGGACCTGATTGACCGTCGTGTCACGAAGATGAAGATGATCTCTCCATCGAACGTCGCCGTTGACATTGGCCGAACCTTAAAACCTCACGAGTACATTGGGATGGTTCGGCGAGAGGTTCTGGACGCGTATCTTCGCAATCGAGCCGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTGATGAAATTGGAACTTCCGAAGGAACAAAATGCGCCGTATGTCCTTCATTACACTTCGTACGACGGGAAGAAAGGAGGCGTCGGGGAGAAGATGACATTGGAGGTCGACGCTGTGATCGGTGCCGACGGAGCTAATTCTCGCGTTGCCAAGGCCATTGACGCCGGCGATTACGATTACGCCATTGCATTTCAGGAGAGAATCAAAATCCCAGATGACAAAATGGTGTACTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTGTCGCCGGATTTTTACGGGTGGGTTTTCCCGAAATGCGACCATGTTGCAGTCGGCACCGGCACGGTGACTCACAAGGCCGATATCAAGAAATTTCAAATAGCCACACGAAATAGGGCAAAGGATAAGATATTAGGAGGGAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAACACCCTCGTCCACGTCGGCTAGCGGGAAGAGTGGCACTTGTCGGCGATGCAGCTGGGTATGTGACGAAATGCTCCGGTGAGGGCATATATTTCGCAGCGAAGAGTGGGAGAATGTGCGCAGAGGCAATCGTCGAGGGATCAGAAAATGGGAAAAGAATGGTGGAGGAATCAGACCTGAGGAAGTACTTAGAGAAATGGGATAAAACTTACTGGCCGACTTATAAGGTTCTGGATGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCGAGAGAAGCTTTTGTTGAGATGTGCGCCGACGAGTATGTGCAGAAGATGACATTCGACAGTTACTTGTATAAGAGAGTGGTGCCTGGGAATCCATTGGATGACTTGAAATTGGCTGTGAATACCATTGGGAGCTTGGTGAGAGCTAATGCTCTGAAGAGGGAGATGGAGAAAAATTTTTCTGGGTTTCAAGAGTCAGATATGGCAGCAACGTCAGCAACTATTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAACTCAACTCATTTTCCCAATCAAAGTCTGCTAGCTTAAGAATCAATTCACAAGATACTCTTCAGAGCTTTTGTGGCCTCAAGGCAGCTTCATCTCTTCATTGTAACTCAGAGTCATCTTTCCTAGGGAAACAGAGCAGTGTTGCCCTATGGCGTTGTCTTGCTCCGTCAGCTCAAAGAGTGAACCAGAATGTATGCAAAAATCTTCAACCTCAAGCTTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTTTGGCACTTCTCATCAAGATGTCGCCATTAGTTGCCACCCTAAACCTTTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGTCACTGCAACACTCCCTCAAAAGTTCAGGATTTCACTGGACCTTCTGAATTAGCCAATGCTTTAAAAGGTGTGGATGTTGTTGTCATACCTGCTGGGGTTCCGAGAAAGCCTGGTATGACTCGTGATGACCTCTTCAACATAAATGCCGGCATAGTGAAAAGTTTGGTCGAGGCGGTTGCTGATAATTGTCCCGATGCTTTCATCCATATCATTAGCAACCCTGTGAACTCAACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAAGGCGTGTATGATCCAAAGAAGCTTTTTGGGGTTACTACATTGGATGTTGTTCGGGCAAACACCTTCGTTGCTGAAAAGAAGAACCTTAAACTGATCGATGTTGATGTCCCAGTTGTTGGGGGACATGCAGGAATAACAATTCTTCCTTTGCTATCAAAGACAAGACCTTCAGTGAGTTTTACAGATGAACAAATTCAAGAACTGACTGTTAGGATTCAAAATGCGGGAACCGAAGTTGTGGAAGCGAAGGCAGGGGCAGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGACGGAGATAGTGATGTATATGAGTGCACTTTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGGAGGAAAGGAATTGAAGCCTTCGTAACGTCTGATCTCCAGGGTTTATCTGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAAAAGCAAGCTGTGGCTGCTTAA 2652 48.23 MASVALKTFTGLRQSSTEKPHFVTQTKANPNPQFRRRFYVAAAKTSPKIAGRNLRVAVVGGGPAGGSAAETLARGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLVMKLELPKEQNAPYVLHYTSYDGKKGGVGEKMTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLDDLKLAVNTIGSLVRANALKREMEKNFSGFQESDMAATSATILSIGATASLNTKLNSFSQSKSASLRINSQDTLQSFCGLKAASSLHCNSESSFLGKQSSVALWRCLAPSAQRVNQNVCKNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLSEYEQKALEALKPELKASIEKGIAFTQKQAVAA 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27875534 27880892 + ClG42_06g0172500.10 Clacu06g1725 252373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1725 883 FunFam Malate dehydrogenase 710 878 - -
Clacu06g1725 883 NCBIfam geranylgeranyl diphosphate reductase 55 452 IPR010253 GO:0015979(InterPro)|GO:0015995(InterPro)|GO:0045550(InterPro)
Clacu06g1725 883 FunFam Malate dehydrogenase 563 709 - -
Clacu06g1725 883 CDD MDH_glyoxysomal_mitochondrial 565 875 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Clacu06g1725 883 NCBIfam malate dehydrogenase 566 876 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Clacu06g1725 883 FunFam Geranylgeranyl diphosphate reductase 53 460 - -
Clacu06g1725 883 Pfam lactate/malate dehydrogenase, NAD binding domain 566 708 IPR001236 GO:0016491(InterPro)
Clacu06g1725 883 NCBIfam geranylgeranyl reductase family protein 56 358 IPR011777 GO:0016628(InterPro)
Clacu06g1725 883 Gene3D - 54 475 IPR036188 -
Clacu06g1725 883 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 51 456 IPR050407 GO:0009535(PANTHER)|GO:0015995(PANTHER)|GO:0045550(PANTHER)
Clacu06g1725 883 NCBIfam geranylgeranyl reductase 54 452 IPR011774 GO:0045550(InterPro)
Clacu06g1725 883 SUPERFAMILY FAD/NAD(P)-binding domain 54 436 IPR036188 -
Clacu06g1725 883 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Clacu06g1725 883 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 - -
Clacu06g1725 883 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Clacu06g1725 883 ProSitePatterns Malate dehydrogenase active site signature. 709 721 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Clacu06g1725 883 Gene3D - 563 709 - -
Clacu06g1725 883 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 710 875 IPR022383 GO:0016616(InterPro)
Clacu06g1725 883 SUPERFAMILY LDH C-terminal domain-like 709 876 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Clacu06g1725 883 Gene3D - 710 881 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Clacu06g1725 883 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 558 709 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1725 K10960 - - csv:101221755 905.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0582 Clacu-Chr2:5619557 Clacu06g1725 Clacu-Chr6:27875534 3.10E-214 dispersed
Clacu02g2472 Clacu-Chr2:37614594 Clacu06g1725 Clacu-Chr6:27875534 1.80E-162 dispersed
Clacu06g1725 Clacu-Chr6:27875534 Clacu07g0992 Clacu-Chr7:24364850 5.30E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36