Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1727 ATGGACGCCACTTGGGGGCCGAAGTGTGAAGTAATGGTCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTACCTATAAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCACCATCTTCAAAAATGCTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCGGGATGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATGTAA 960 37.19 MDATWGPKCEVMVFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSPSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQCFSSSTTIHDRDEEDDEEMKYLLSDCSFSSTNCTLFM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27885663 27887315 - ClG42_06g0172700.10 Clacu06g1727 252375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1727 319 MobiDBLite consensus disorder prediction 134 148 - -
Clacu06g1727 319 PANTHER PROTEIN RKD4 133 280 IPR044607 GO:0003700(InterPro)
Clacu06g1727 319 Pfam RWP-RK domain 151 198 IPR003035 -
Clacu06g1727 319 MobiDBLite consensus disorder prediction 109 148 - -
Clacu06g1727 319 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Clacu06g1727 319 MobiDBLite consensus disorder prediction 112 133 - -
Clacu06g1727 319 Coils Coil 218 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2162 Clacu-Chr1:33101646 Clacu06g1727 Clacu-Chr6:27885663 1.40E-15 transposed
Clacu05g1059 Clacu-Chr5:9489951 Clacu06g1727 Clacu-Chr6:27885663 7.80E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47941 PF02042 RWP-RK 5.80E-21 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1727 - - - 0.0