Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1741 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACTTGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCTTCCTCACTGACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGAAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCACCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTACCCCCAAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTCATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCCGCCCCCACCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTCGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1611 43.39 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDLVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTATAAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPQKYPFTSLDFGSSQPNFMSWNNNNNSGHQAYSNISKNNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSFVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28004319 28009111 - ClG42_06g0174100.10 Clacu06g1741 252389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1741 536 MobiDBLite consensus disorder prediction 516 536 - -
Clacu06g1741 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1741 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 494 IPR044810 GO:0003700(InterPro)
Clacu06g1741 536 MobiDBLite consensus disorder prediction 1 41 - -
Clacu06g1741 536 MobiDBLite consensus disorder prediction 356 377 - -
Clacu06g1741 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1741 536 FunFam probable WRKY transcription factor 31 202 279 - -
Clacu06g1741 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1741 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g1741 536 MobiDBLite consensus disorder prediction 152 204 - -
Clacu06g1741 536 MobiDBLite consensus disorder prediction 492 511 - -
Clacu06g1741 536 Coils Coil 37 85 - -
Clacu06g1741 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2251 Clacu-Chr1:33655052 Clacu06g1741 Clacu-Chr6:28004319 8.20E-41 dispersed
Clacu06g1741 Clacu-Chr6:28004319 Clacu10g1288 Clacu-Chr10:25790256 3.90E-23 dispersed
Clacu05g1143 Clacu-Chr5:10493681 Clacu06g1741 Clacu-Chr6:28004319 9.00E-43 transposed
Clacu01g1520 Clacu-Chr1:27283391 Clacu06g1741 Clacu-Chr6:28004319 1.60E-70 wgd
Clacu11g0604 Clacu-Chr11:5823888 Clacu06g1741 Clacu-Chr6:28004319 2.10E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47946 PF03106 WRKY 1.20E-23 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1741 - - - 0.0