Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1745 ATGGGTCCTTTCATTTGGGTCTTCTCCTTCATTTTAGCAGCTACCCTTTTGAGCCACTGCTGTTTTTCTCTCACTGAAGATGGTCTAACATTGTTGGAGATCAAAAGTACTTTAAATGACACTAAGGACGTCCTCACTAACTGGAACCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCGAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATTCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATGTTGGAAACCTTTCATATCTTACCATACTTGATTTATCAAGCAATTCCCTTAAGGGTAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACTAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCGTTCTTTGGCAATCAAGGTCTTTGTGGCCGACAAGTGAACAAGCCGTGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCACATGCTGCAAGTGATGAAGCCGCAGTTCCTGCCAAACGGTCCTCTCATTACATGAAAGGACTGTTGATTGGTGCAATATCGACAGCAGGGTTTGTATTGGTCATATTTATTGTATTCATGTGGACTCGTTTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGCGAAACAAGTGCGAAGCTTATTACATTTCATGGTGATCTACCGTATCCAACACGTGAGATCATAGAAAAGCTGGAAGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACTGTGTATCGGATGGTCATGAATGATTCTGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGGCGGTCCAGACCAAGTTGTTGAAAGAGAATTGGAGATATTGGGTAGCATTAAGCACATAAATTTAGTGAAATTGCGTGGTTATTGCCGGCTTCCTTCTTCAAAGCTTCTCATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAATATGGACCACAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCACTAGGCTCTGCTCGAGGATTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTTCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTAATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCGAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACACTGCGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGTCGGAATGCAGATGTTGAAACTGTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACCGATGGCAACCCGACTATGCGACCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGGTGATGTCGCCTTACCCGAGCGATTACACCGAGTCTCACTCAGATTATTCGTGA 1803 43.7 MGPFIWVFSFILAATLLSHCCFSLTEDGLTLLEIKSTLNDTKDVLTNWNPSDESPCKWTGISCHPEDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNVGNLSYLTILDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAASDEAAVPAKRSSHYMKGLLIGAISTAGFVLVIFIVFMWTRLVSKKERTAKSYMEVKKQKNRETSAKLITFHGDLPYPTREIIEKLEALNETNVVGSGGFGTVYRMVMNDSGAFAVKKIDRTQGGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPQKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVNGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCRNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEVMSPYPSDYTESHSDYS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28042147 28045696 - ClG42_06g0174500.10 Clacu06g1745 252393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1745 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
Clacu06g1745 600 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Clacu06g1745 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Clacu06g1745 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1745 600 SUPERFAMILY Protein kinase-like (PK-like) 290 581 IPR011009 -
Clacu06g1745 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Clacu06g1745 600 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Clacu06g1745 600 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Clacu06g1745 600 SUPERFAMILY L domain-like 22 186 - -
Clacu06g1745 600 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Clacu06g1745 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Clacu06g1745 600 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 86 IPR050647 -
Clacu06g1745 600 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1745 Clacu-Chr6:28042147 Clacu07g1132 Clacu-Chr7:25947298 6.30E-123 dispersed
Clacu02g0388 Clacu-Chr2:3486360 Clacu06g1745 Clacu-Chr6:28042147 1.10E-09 transposed
Clacu01g1511 Clacu-Chr1:27209011 Clacu06g1745 Clacu-Chr6:28042147 9.20E-215 wgd
Clacu11g0593 Clacu-Chr11:5664796 Clacu06g1745 Clacu-Chr6:28042147 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73667 PF00069 Pkinase 8.70E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1745 - - - 0.0