Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1756 ATGGAAGCTCCTCCGATTCCGAGCAACAGATGGATGGCTACCGTTGCCAGCATTTGGATCCAGTGCATCTGCGGTCCATCCTACACCTTCAGCATCTACTCCGCCGCCCTCAAATCCACTCAAAACTACGATCAATCCACTCTCGACACTGTTTCCGTCGTCAAAGATATCGGCGCCACCGCCGGGGTTCTCTCCGGCCTCCTCTACTCCGCCGTCGTCTCCACAGACCACCCCCGTCGCCCATGGATCGTCCTCACCGTCGGAGCTATTCAATGTTTCCTTGGATACATTTTCATGTGGGCCGCCGTCTCCGGCTTAATCCCTCGACCGCCGGTGCCGACAATGTGTCTGTTCATGTTCTTAGCCGTCCATGCCCAAGTTTTCTTCAACACGGCTAATGTTGTCACTGGCGTTCATAATTTCCAGCTCTACAGCGGCACCATTGTCGGCATTCTAAAGGGATTTTTGGGTCTTAGTGCAGCAGTACTGATCCAATTCTCCAACGCATTCTTCAACGGAGACCCTGTAAATTATCTTTTGATGCTGGCGATTTTGCCGGCGGTTACGACTCTGTTGCTCATGAGATTCGTCTTAATCGACAATAAAACAGAGACCGGAAATGAATTGACCCATTTGAATTCCCTCTCGACAATTGCTCTAACAATCTGCGGATATCTCATGATTCTAATCATTTTAGACAACGTTCTCAATCTAGCGACATGGGTTCGCATCTTCACCTTCATTCTCCTCCTCGCCTTTCTTGTTTCCCCTGTCGGAATCGCAATCAGAGCAAAAACAGAAGACTCTGTTTTCAAAACGAAGCTTCAAATTACCGAGAATCCCGTTGAATATCATCGCATTCCCAGCGAGGAGAAGATCAATGATGAGCTGGTGATTGTTAAAGACGGAGAAATGAATATAATCGAGGCAATTGGCACAATGAATTTCTGGCTATTGTTTTTCGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGTGCCGGTCCTTGGGATACAGAACAGTCGAAATCAATACATTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGGCGTTTGGGATCTGGCTATGCCTCTGATCTTCTCCTCTGGAAATTAGGGTGGGCGAGGCCATTGTTAATGGCCATTGCCTTGCTAACAATGAGCATCGGCCATATCATCGTAGCTTTAGGATTTCGTGGGAATTTGTACTTGGGATCGGTGATTATCGGGATTTGTTACGGGTCTCAATGGTCGTTAATGCCGGCAATTACGTCGGAGATATTTGGAGTAAAGCATATGGAAGCCTCCGCCGGAGATAACTCTTGCTCCGGTGGACACTTTTATGACGTCTTTTCTGATCATGGCGGCGGTGGCTTTCTTTGGGTTTGTGGTTGTTGTTGCTCTGTTTTTCCGGACCAGAAGATTCTATCAACTTCTTGTACGGAGAAGGCTCAAAGATTAGATGAATTTGCGGCTTGA 1503 47.57 MEAPPIPSNRWMATVASIWIQCICGPSYTFSIYSAALKSTQNYDQSTLDTVSVVKDIGATAGVLSGLLYSAVVSTDHPRRPWIVLTVGAIQCFLGYIFMWAAVSGLIPRPPVPTMCLFMFLAVHAQVFFNTANVVTGVHNFQLYSGTIVGILKGFLGLSAAVLIQFSNAFFNGDPVNYLLMLAILPAVTTLLLMRFVLIDNKTETGNELTHLNSLSTIALTICGYLMILIILDNVLNLATWVRIFTFILLLAFLVSPVGIAIRAKTEDSVFKTKLQITENPVEYHRIPSEEKINDELVIVKDGEMNIIEAIGTMNFWLLFFAMMCGMGSGLATINNMNQLCRSLGYRTVEINTFVSLWSIWNFLGRLGSGYASDLLLWKLGWARPLLMAIALLTMSIGHIIVALGFRGNLYLGSVIIGICYGSQWSLMPAITSEIFGVKHMEASAGDNSCSGGHFYDVFSDHGGGGFLWVCGCCCSVFPDQKILSTSCTEKAQRLDEFAA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28138914 28140587 + ClG42_06g0175600.10 Clacu06g1756 252404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1756 500 SUPERFAMILY MFS general substrate transporter 221 475 IPR036259 -
Clacu06g1756 500 Gene3D MFS general substrate transporter like domains 206 479 IPR036259 -
Clacu06g1756 500 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 442 - GO:0016020(PANTHER)
Clacu06g1756 500 Pfam Nodulin-like 10 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1756 Clacu-Chr6:28138914 Clacu10g1973 Clacu-Chr10:33252910 2.70E-71 dispersed
Clacu06g1755 Clacu-Chr6:28132589 Clacu06g1756 Clacu-Chr6:28138914 1.50E-155 tandem
Clacu06g1756 Clacu-Chr6:28138914 Clacu06g1757 Clacu-Chr6:28143865 4.80E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1756 - - - 0.0