Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1762 ATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAAGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCTGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGATTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 828 43.48 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGCGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28176299 28179366 + ClG42_06g0176200.10 Clacu06g1762 252410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1762 275 MobiDBLite consensus disorder prediction 69 84 - -
Clacu06g1762 275 MobiDBLite consensus disorder prediction 47 68 - -
Clacu06g1762 275 MobiDBLite consensus disorder prediction 105 144 - -
Clacu06g1762 275 CDD bHLH_AtBPE_like 143 225 - -
Clacu06g1762 275 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Clacu06g1762 275 Gene3D - 150 224 IPR036638 GO:0046983(InterPro)
Clacu06g1762 275 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Clacu06g1762 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu06g1762 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983(InterPro)
Clacu06g1762 275 MobiDBLite consensus disorder prediction 85 104 - -
Clacu06g1762 275 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Clacu06g1762 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Clacu06g1762 275 Coils Coil 200 220 - -
Clacu06g1762 275 MobiDBLite consensus disorder prediction 47 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1762 Clacu-Chr6:28176299 Clacu09g0843 Clacu-Chr9:7767241 3.20E-37 dispersed
Clacu08g1061 Clacu-Chr8:20631801 Clacu06g1762 Clacu-Chr6:28176299 1.80E-70 transposed
Clacu11g0583 Clacu-Chr11:5542861 Clacu06g1762 Clacu-Chr6:28176299 5.30E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47949 PF00010 HLH 2.20E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1762 - - - 0.0