Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1767 ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTCCTCCTCCTTCATCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAGAGGGTGAGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1455 45.43 MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSPPPSSAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVSETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28215011 28217158 + ClG42_06g0176700.10 Clacu06g1767 252415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1767 484 ProSiteProfiles Protein kinase domain profile. 151 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 SMART serkin_6 151 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 ProSitePatterns Protein kinases ATP-binding region signature. 157 188 IPR017441 GO:0005524(InterPro)
Clacu06g1767 484 MobiDBLite consensus disorder prediction 117 133 - -
Clacu06g1767 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 MobiDBLite consensus disorder prediction 48 71 - -
Clacu06g1767 484 MobiDBLite consensus disorder prediction 53 67 - -
Clacu06g1767 484 CDD STKc_AGC 157 415 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Clacu06g1767 484 FunFam Non-specific serine/threonine protein kinase 148 262 - -
Clacu06g1767 484 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 PANTHER RIBOSOMAL PROTEIN S6 KINASE 114 477 - -
Clacu06g1767 484 MobiDBLite consensus disorder prediction 102 133 - -
Clacu06g1767 484 FunFam Non-specific serine/threonine protein kinase 239 434 - -
Clacu06g1767 484 SMART pkinase_C_6 416 475 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 Pfam Protein kinase domain 153 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1767 484 SUPERFAMILY Protein kinase-like (PK-like) 148 478 IPR011009 -
Clacu06g1767 484 Gene3D Transferase(Phosphotransferase) domain 1 239 434 - -
Clacu06g1767 484 Gene3D Phosphorylase Kinase; domain 1 150 457 - -
Clacu06g1767 484 Pfam Protein kinase C terminal domain 436 473 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2340 Clacu-Chr5:31786955 Clacu06g1767 Clacu-Chr6:28215011 1.30E-54 dispersed
Clacu06g0961 Clacu-Chr6:13174916 Clacu06g1767 Clacu-Chr6:28215011 1.50E-15 dispersed
Clacu06g1767 Clacu-Chr6:28215011 Clacu08g1755 Clacu-Chr8:26969934 1.10E-56 dispersed
Clacu06g1767 Clacu-Chr6:28215011 Clacu02g0316 Clacu-Chr2:2871310 1.10E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73668 PF00069 Pkinase 7.10E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1767 K04688 - csv:101214867 871.692