Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1772 ATGGCGACGGTTCCTGACCGCTTCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGACGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGGTTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACTGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTCAAAGAGGAAGCTACATTTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCATGGATTTCTGCAACGATCAGCACCGTCATTTCGACACGAAGACGAAGACAAAGGCGAAGACGAAGAGCCAAAGCAGAGAGCTTCATCGGAGCTAAGGAAAATGACTCACTCGAAGCTTGAAGACGCCACTGGTTTGAAGGAAGACCTCATCGCAGACGCCTGGGCCGCCGCCATTAAAGCTCACAAACATTCGAAGCCATTTCTCGTTGATAAAACCCGAGATTTCTCCATCATCAGCTTCGCCGGATCTTGGTCGTCCGAAGCCTGGTTCTCTGCTTCTGATTCATCTTTCGGAGAAACAAAGATCGACACTCGGCTGTTTCCATCCGTCAGGAGCATCGGCGTCGACGATTATGCAGTCGTCAACTCTGCATTTTTCCAGAAATTTGAGGGAATTTTGGGGAAGCTTAAGGAGGTTCTGAGAGTGAATAAGCCTGTGGTGTTTACTGGCCACTCAGCCGGAGGTCCGATAGCCATTCTCGCAACCATCTGGCTGTTGGAACAGCAAAGAAACTCAGACTCAAACACCAACTCCACTCCTCCAAGATGCATCACATTTGGATCTCCCCTTGTTGGCAACTTCATTTTCTCCCATGCCCTCAAAAGGGAGAAATGGTCCACCCATTTCGTGCACTTCGTCATGAGATACGACATTGTTCCACGAATCCATGTTGCTCCTCTACCTTCTTTGCAACCACAATTGCAAACCATCCTCAACTCCCTGAACTCGAGATCACCAGGGTCATCATCAAATGGAAATATAGCTACTGAATTCTTCATGACGGTGATGAGGAATGCATCGGCTGTGGTAAGCAACGCCGCCTGCCATCTTATGGGAAATACTAACCTTTTGCTAGACACTTTGAAAAGCTTTGTGAAATTGAGTCCTTACAGCCCTTTTGGCACTTACATTTTCTTTACTGAGAGCGAGAAAGTGGTGGTGGTGAGCAACCCGGATGCTATTTTACAAATACTATTCTACGCTTGTCAGTTGAGCTCTGAGAGCGAATCTGATCACATTGCTCAACAGAGTTTAAATGCCCATTGGGGTTATGAATCTAAAATGCAGAAATTGGAGCTCCTACATGCCATTCGTCTGGATGAATTGGATAAGCTTCCATTGTCCTTAACGAGCAGGAATACACCATTAACTGAAGCGTTGAATGAACTTGGCCTAAGTTCGAGAGCTTTATTGAATCTTCGGGCAGCGGGCACATTTGAAGAGCAGAAAATGAAAAATCAACAAAGGATGGAAGCAAAGAAACAATATATCAAGGAACGATTGGATTGGCTAGAAGAAAATTATAGAGCTGTATGTAAGGTTGATGGTTTGGGATACTATGATGCATTTAAACTCCAGAAGGATCCGAAAGACTTCCAAGCTAATATCAAGAGGCTTGAGCAAGCAGGCATATGGGATGAGATCGTAGAGATGCTCAAAAGATACGAGCTCCCAGAGGAATTCGAGGGCGATGACGAATGGATAAAACTTGGAACCAGGTTTCGCCGTCTCATTGAGCCTCTAGATATTGCTAACTACTATAGACACTCGAAGAATGATGATACTGGTCCTTATCTTGTAAAAGGAAGGCCAAAACGTTACAGATTTACACAAAGATGGCTCGAACATAATCAAAAGATGACAGAACCCAGTGAAGAATCAACTCTTTGGGCAAGGGTTGAGGAGCTTCGTATCCAAACCAAAACCAAAATGTACGCTGAATATTCAAGAGAAATTATAGAGCTGGAGAAGAAGATGAAGCGATGGGTCACTGAGATTGAAGATGACATGTTGTTAAAGAAATCTACCTTCATGGAGTGGTGGAAGACACTACCGGAACATCATAGATCACAGTCTTGTATTAGGGATGATATCGAGAGGATGGCAACTGACGACGATGCTATTAACACGATGTAG 2529 44.6 MATVPDRFRRNPIDRLVGISDDSKQSCSSTTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGSKRKLHFDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRHEDEDKGEDEEPKQRASSELRKMTHSKLEDATGLKEDLIADAWAAAIKAHKHSKPFLVDKTRDFSIISFAGSWSSEAWFSASDSSFGETKIDTRLFPSVRSIGVDDYAVVNSAFFQKFEGILGKLKEVLRVNKPVVFTGHSAGGPIAILATIWLLEQQRNSDSNTNSTPPRCITFGSPLVGNFIFSHALKREKWSTHFVHFVMRYDIVPRIHVAPLPSLQPQLQTILNSLNSRSPGSSSNGNIATEFFMTVMRNASAVVSNAACHLMGNTNLLLDTLKSFVKLSPYSPFGTYIFFTESEKVVVVSNPDAILQILFYACQLSSESESDHIAQQSLNAHWGYESKMQKLELLHAIRLDELDKLPLSLTSRNTPLTEALNELGLSSRALLNLRAAGTFEEQKMKNQQRMEAKKQYIKERLDWLEENYRAVCKVDGLGYYDAFKLQKDPKDFQANIKRLEQAGIWDEIVEMLKRYELPEEFEGDDEWIKLGTRFRRLIEPLDIANYYRHSKNDDTGPYLVKGRPKRYRFTQRWLEHNQKMTEPSEESTLWARVEELRIQTKTKMYAEYSREIIELEKKMKRWVTEIEDDMLLKKSTFMEWWKTLPEHHRSQSCIRDDIERMATDDDAINTM 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28263442 28270824 - ClG42_06g0177200.10 Clacu06g1772 252420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1772 842 MobiDBLite consensus disorder prediction 213 242 - -
Clacu06g1772 842 Pfam Response regulator receiver domain 35 154 IPR001789 GO:0000160(InterPro)
Clacu06g1772 842 Coils Coil 769 796 - -
Clacu06g1772 842 SUPERFAMILY alpha/beta-Hydrolases 272 434 IPR029058 -
Clacu06g1772 842 PANTHER PROTEIN EDS1-RELATED 242 827 IPR044214 GO:0006952(InterPro)
Clacu06g1772 842 CDD REC_typeA_ARR 35 157 - -
Clacu06g1772 842 Pfam Lipase (class 3) 282 427 IPR002921 GO:0006629(InterPro)
Clacu06g1772 842 SUPERFAMILY CheY-like 32 157 IPR011006 -
Clacu06g1772 842 CDD Lipase_3 272 437 - -
Clacu06g1772 842 Pfam Enhanced disease susceptibility 1 protein EP domain 637 824 IPR041266 -
Clacu06g1772 842 Gene3D alpha/beta hydrolase 239 560 IPR029058 -
Clacu06g1772 842 ProSiteProfiles Response regulatory domain profile. 34 162 IPR001789 GO:0000160(InterPro)
Clacu06g1772 842 Gene3D - 32 191 - -
Clacu06g1772 842 SMART REC_2 33 158 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1772 Clacu-Chr6:28263442 Clacu10g1595 Clacu-Chr10:29270778 1.00E-38 dispersed
Clacu04g0225 Clacu-Chr4:7142721 Clacu06g1772 Clacu-Chr6:28263442 3.10E-45 transposed
Clacu04g0453 Clacu-Chr4:16879093 Clacu06g1772 Clacu-Chr6:28263442 1.20E-41 transposed
Clacu05g2882 Clacu-Chr5:35979440 Clacu06g1772 Clacu-Chr6:28263442 6.50E-42 transposed
Clacu07g0533 Clacu-Chr7:6887029 Clacu06g1772 Clacu-Chr6:28263442 1.90E-39 transposed
Clacu08g0725 Clacu-Chr8:17094516 Clacu06g1772 Clacu-Chr6:28263442 4.20E-35 transposed
Clacu05g2695 Clacu-Chr5:34526605 Clacu06g1772 Clacu-Chr6:28263442 2.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47951 PF18117 EDS1_EP 2.50E-52 No_clan Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1772 K18875 - csv:101214385 1006.51