Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1774 ATGGGGAGCGCTGAGGAGAAGGTTGTTGCTGTGATAATGGTCGGCGGTCCCACTAAAGGAACTAGATTTCGACCTCTGTCATTGAATATTCCGAAGCCTCTTTTTCCTTTGGCCGGACAGCCGATGGTGCATCACCCAATTTCTGCTTGTAAAAGGATTCCAAACCTGGCTCAGATTTTTCTTGTTGGGTTCTATGAGGAGCGTGAATTTGCATTATATTTATCTTCCATTTCTAATGAACTGAAAGTCCCTATTAGATATTTGAAGGAACAGAAGCCACATGGTTCTGCTGGTGGACTTTTTCACTTCAGAGATCTGATCATGGAAGACAATCCGTCACATATTTTCTTGCTGAATTGTGATGTTTGCTCGAGTTTTCCACTCCCACAAATGCTAGATGCTCACAAAAGTTATGGAGGGATGGGAACAATCCTAGTAATCAGAGTATCTGCTGAGGCAGCTCACCAGTTTGGAGAGTTGGTTGCAGATCCAACAACAAATGAACTACTTCACTATGCGGAAAAACCCGAAACTTTTGTGAGTGACCTCATAAACTGTGGGGTCTACATATTTACACCAGACATATTTTCTGCAATTCAAGGCGTTTCTACTCAGCGGAAAGAGAGAGCAAATTTAAGTCGATTATCTAGCTTTGAAGCCCTCCAGTCTGCGGCAACAAGGAGTTTGCCGAAAGACTACGTAAGATTGGATCAAGACATTCTATCGCCCTTTGCAGGGAAGAAACAGTTATATACGTATGAAACTATGGACTACTGGGAACAGATCAAAACACCTGCAATGTCGTTGAAATGCTCTGGCTTATATCTCGCCCAATTCCGGGTCACCTCCTCCAACCTATTGGCAAATGGAGATGGTACAAAAAATGCTATCATTACTGGTGATGTTTATATTCATCCTTCAGCTAAAGTACATCCAACTGCCAAGATTGGTCCTAATGTCTCAATATCAGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATCAGTTGTATCATCCTTGATGATGTTGAAATTAAGGATAATGCAGTTGTCATTCATGCTATTGTTGGGTGGAAATCCTCAATTGGTCGATGGTCTCGTGTACAGGCTGATGGAGATTACAATGCAAAGCGGGGAGTTACAATTCTAGGTGAAGCAGTCACGGTTGAGGATGAAGTAGTGGTTACAAACAGCATTGTTCTCCCAAACAAGACTCTCAATGTGAGTGTTCAAGAGGAAATAATTCTATGA 1251 42.37 MGSAEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLFHFRDLIMEDNPSHIFLLNCDVCSSFPLPQMLDAHKSYGGMGTILVIRVSAEAAHQFGELVADPTTNELLHYAEKPETFVSDLINCGVYIFTPDIFSAIQGVSTQRKERANLSRLSSFEALQSAATRSLPKDYVRLDQDILSPFAGKKQLYTYETMDYWEQIKTPAMSLKCSGLYLAQFRVTSSNLLANGDGTKNAIITGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLISCIILDDVEIKDNAVVIHAIVGWKSSIGRWSRVQADGDYNAKRGVTILGEAVTVEDEVVVTNSIVLPNKTLNVSVQEEIIL 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28277918 28281155 - ClG42_06g0177400.10 Clacu06g1774 252422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1774 416 Gene3D Hexapeptide repeat proteins 284 413 - -
Clacu06g1774 416 FunFam Putative GDP-mannose pyrophosphorylase 285 413 - -
Clacu06g1774 416 FunFam Mannose-1-phosphate guanyltransferase alpha 7 279 - -
Clacu06g1774 416 SUPERFAMILY Nucleotide-diphospho-sugar transferases 8 358 IPR029044 -
Clacu06g1774 416 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 10 416 IPR050486 GO:0005737(PANTHER)
Clacu06g1774 416 CDD M1P_guanylylT_A_like_N 10 275 - -
Clacu06g1774 416 Pfam Nucleotidyl transferase 10 221 IPR005835 GO:0009058(InterPro)
Clacu06g1774 416 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 278 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1774 K00966 - - csv:101213901 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0812 Clacu-Chr11:8017670 Clacu06g1774 Clacu-Chr6:28277918 2.70E-47 transposed
Clacu10g1456 Clacu-Chr10:27717131 Clacu06g1774 Clacu-Chr6:28277918 2.80E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001958 2 5 2 3 3 2 2 1 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 2 2 1 4 2 2 67