Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1777 ATGGGCGCCAATGGCAAGTTCCGGTGGAAATTCCCCTTCCCTCACCGTCGTAATTCTAGGCTTGAATCGAACCAGCCTCCTAAAGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCTGTCGTCGTCTCTTCTGGACAGACGTTTGAGCGTGTTTCTGCGCAGGTTTGCAGAAATTTAGGGTTCTCTCCTGTGTTAGAGGATGGTTCGAAGCCAGATTTCACTACTGTGATTCCGAATTTAGCTATGAAGAAGACGATTCTCCATTGGTGTGAGAAATCTGGTGCTCGGAATCTTCAGCCGCCTGATTACACCTCCGTTGAGAGCCTTGTTGCTGCATTGATGGAGAAGGAGAAGCCCCAAGCCGGAATTAGGGATTCCTCGGATAGGGATTTGTTAAAGAGAGTATCGGATTTGCCGCCGGTGAATTTTTCGCATGCTGCGACGGAGTATGGTCATCGTCCAGAACATTTCTACAGCAGCTCGTCGGAGGAATCGGTCATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCTTGTTATTATTCATTTTCGTCTTCTTCCTCTGAAACCGTGGAAAACGAAGTGCTCATCCAAACCCTAGGCCCTAATTCATCGATTTCCGAAGATGAGAAGAATTTTTTATCGAAGCTTGAGAGTCCCGATGTGTTTCAGCAAGAAGAAGGCGTTATTTCGCTAAGAAAAATCACGAAAACCAATGAGAATATTAGGGTTTCGCTCTGTACGCCTCGGATTCTTTTCTCTCTCCACCGATTGGTAACGTCGAGATATCCCAAAGTACAAATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCGAACAAACTGAAGATCGCGCGGTCGGGATTGGTTCCACACTTAATCGATGTGCTAAAAGGAGGACATACCGAAGCGCAAGAACACGCCGCCGGCGCGCTCTTCAGCCTAGCTTTAGAGGATGAAAATCGGATGGCGATCGGAGTTCTCGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCCGCTCTGTGTCTCTACAACCTGACAATGATTCAGAGCAACCGAGTGAAGCTTGTGAAACTCGGCGCCGTAACCACTCTACTTTCCATGGTGAAATCAAGAAACTCGACGAATCGGCTGCTACTGATCCTCTGCAACATCGCCGTGTGTCAGGAGGGAAGGTCGGCAATGCTGGACGCCGACGCCGTCGCGCTTTTGGTCGAAATGCTGAGGGAGAAAGAGCTAAACTCCGAATCAACCCGCGAGAATTGCGTTGCGGCATTGTACGCTCTGAGCTATGGAAGCATGAGATTCAAAGGATTAGCGAAGGATGCCGGAGCGATAGAGGTTTTGATAGAGATTGTTGAAAGAGGAAGCGAGAGAGCGAGAGAGAAGGCGAAGAAGATATCGGAGAGGATGAGAACGAGAGGGAGATTCGATGAAGACGACGACGAAGAAGACGATCGTGGAGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCGACTCGGTACCGAATCGGAGGTGGAAAATTTCCCAGCTCGGCTAATACGGTGCCGTTTTGA 1623 50.15 MGANGKFRWKFPFPHRRNSRLESNQPPKEFICPVSGSLMADPVVVSSGQTFERVSAQVCRNLGFSPVLEDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPDYTSVESLVAALMEKEKPQAGIRDSSDRDLLKRVSDLPPVNFSHAATEYGHRPEHFYSSSSEESVIVGGSPGTPLPFTTRPACYYSFSSSSSETVENEVLIQTLGPNSSISEDEKNFLSKLESPDVFQQEEGVISLRKITKTNENIRVSLCTPRILFSLHRLVTSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPHLIDVLKGGHTEAQEHAAGALFSLALEDENRMAIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNIAVCQEGRSAMLDADAVALLVEMLREKELNSESTRENCVAALYALSYGSMRFKGLAKDAGAIEVLIEIVERGSERAREKAKKISERMRTRGRFDEDDDEEDDRGGESSFERGGLSSTRYRIGGGKFPSSANTVPF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28307531 28309153 - ClG42_06g0177700.10 Clacu06g1777 252425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1777 540 MobiDBLite consensus disorder prediction 482 540 - -
Clacu06g1777 540 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 Pfam Armadillo/beta-catenin-like repeat 330 368 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 SMART arm_5 409 452 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 SMART arm_5 329 369 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 SUPERFAMILY RING/U-box 16 99 - -
Clacu06g1777 540 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Clacu06g1777 540 Pfam U-box domain 27 95 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu06g1777 540 FunFam RING-type E3 ubiquitin transferase 14 100 - -
Clacu06g1777 540 Gene3D - 399 503 IPR011989 -
Clacu06g1777 540 Gene3D - 217 398 IPR011989 -
Clacu06g1777 540 SMART Ubox_2 29 92 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu06g1777 540 MobiDBLite consensus disorder prediction 482 499 - -
Clacu06g1777 540 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu06g1777 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 98 IPR013083 -
Clacu06g1777 540 SUPERFAMILY ARM repeat 220 485 IPR016024 -
Clacu06g1777 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 336 IPR000225 GO:0005515(InterPro)
Clacu06g1777 540 PANTHER U BOX DOMAIN-CONTAINING 20 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1777 Clacu-Chr6:28307531 Clacu11g1569 Clacu-Chr11:26829994 1.20E-11 dispersed
Clacu01g1482 Clacu-Chr1:26902538 Clacu06g1777 Clacu-Chr6:28307531 1.20E-88 wgd
Clacu06g1777 Clacu-Chr6:28307531 Clacu09g1914 Clacu-Chr9:34034465 2.90E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1777 - - - 0.0