Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1778 ATGGCTTTCTTTCCTCCTCCCGCTTTCCTTTTTGCAATTTTGCTATCTGTTGTTCCATTCTCAGTTGAATCGAAACTTTCTCTTGATTATTACCAGAAAACTTGCCCCGATTTTGCCAGAATCGTCCGTGAAACCGTCGCTAACAAGGTGGCTTCTAGCCCAACCACCACCGCCGCAACTATGCGTCTCTTCCTCAACGATTGTTTAGTTGGAGGTTGCGATGGCTCTGTTCTCGTTGCTTCTAACGCCTTCAATCACGCCGAGCGCGATGCTGAAATCAATCTTTCTCTTCCAGGAGACGCGTTCGACGTCGTCGCTCGATCGAAGATCACCTTAGAGCTTTCTTGCCCCGGGATCGTCTCTTGTTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCGCGATTGCAGGCGGACCGTCGTACAATGTTCAATTAGGGCGAAAAGACAGCCTGGTATCGAAATCTTCCGAAGTGGAAGGCAATATTCCGAAGGCGAATCAAACAATTGACGAGATGATTAAGCTATTCACATCGAAAGGATTCACGATTCAAGAAATGGTAGCGTTGTACGGCGGACGAACAATCGGATTCTCAAATTGCAAGGAATTCAGCGATCGTATCTTCAAGTTTAGCAAGGAAACACCAACAGATCCAGAGATTCATCCAAAGTTTGCAGAGGCTTTGAAAAAGACTTGCGAAGGATATGAGAAGAATCCGGGAATGTCGGCTTACAGCGACGCCGTAACGCCGGGGAAATTCGATAATGTGTATTACCAGAATCTGCTTAGGGGAATGGGGTTATCGGCGTCGGATCATGCGTTGGTGAAGGATCCGAGAACGAGGAAATTCGTGGAGATGTACGCCGGAAATCAAGCGTTGTTCTTCAAGGATTTTGCACACGCCATGGAGAAGATGAGCGTTCGTGAAGTGAAAACCGGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGTGTTCAATGAAATCCACACTTGA 996 47.49 MAFFPPPAFLFAILLSVVPFSVESKLSLDYYQKTCPDFARIVRETVANKVASSPTTTAATMRLFLNDCLVGGCDGSVLVASNAFNHAERDAEINLSLPGDAFDVVARSKITLELSCPGIVSCSDVLAQATRDLIAIAGGPSYNVQLGRKDSLVSKSSEVEGNIPKANQTIDEMIKLFTSKGFTIQEMVALYGGRTIGFSNCKEFSDRIFKFSKETPTDPEIHPKFAEALKKTCEGYEKNPGMSAYSDAVTPGKFDNVYYQNLLRGMGLSASDHALVKDPRTRKFVEMYAGNQALFFKDFAHAMEKMSVREVKTGGKGEVRRKCDVFNEIHT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28318588 28319583 - ClG42_06g0177800.10 Clacu06g1778 252426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1778 331 Pfam Peroxidase 42 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 FunFam Peroxidase 29 175 - -
Clacu06g1778 331 ProSiteProfiles Plant heme peroxidase family profile. 25 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PANTHER - 13 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 FunFam Peroxidase 164 306 - -
Clacu06g1778 331 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 Gene3D Peroxidase, domain 2 164 306 - -
Clacu06g1778 331 CDD secretory_peroxidase 25 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1778 331 Gene3D - 29 327 - -
Clacu06g1778 331 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1778 Clacu-Chr6:28318588 Clacu11g0924 Clacu-Chr11:8916384 4.80E-72 dispersed
Clacu01g1479 Clacu-Chr1:26872763 Clacu06g1778 Clacu-Chr6:28318588 1.00E-122 wgd
Clacu10g1450 Clacu-Chr10:27652853 Clacu06g1778 Clacu-Chr6:28318588 1.00E-103 wgd
Clacu06g1778 Clacu-Chr6:28318588 Clacu09g1915 Clacu-Chr9:34036628 6.20E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1778 K00430 - csv:101213178 586.26