Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1782 ATGTTGGTCTTTTTAGTTCATTGCAATCTTCGCCAATACCATCGCATCGTCTTGTATCTGTATGTCTTCTGGCCTCCTATGTTGTCGCAGAAAAGAAACCCAGATGATGGAGATGGTCCGGCGGATGGTGATAATCCCGATGATAAGCGTAGAAAGTTTTGTTTATGGAGCGTGGTTCGTGATGCCACATCATTGCAATCAATGCAACAACTATTGGAGCCAGTCATTCGTAAAGTGGTAAGGGAGGAGATTGAATCTGCACTAAGAAAGTACATTACCAATGTGCAAAGGAATGACGAGAATGATGGGAAAGAAATCTATTCTTCCGGGCCGAGATGCTTTCAATTGAAGTTTATAACTGATATTTCTCTCCCGGTATTTACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAGCTTGATGGTGGCTTTGGTTGACACCTTAACTGGGGAAGTTGTTGGCACTGGGTCTCAATCCTCAGCCAAAGTGGAAATTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAAGTGATAGTTACACTGCAGAGGAGTTCAAGAATAACATTGTAAGAGAGAGGGAAGGGAAGAAACCACTTCTTACAGGAGATACATGTGTGAGTCTCAAAGATGGCATTGGTTTGGTAGGTGAGATTTCTTTCACTGACAATTCAAGCTGGACTAGAAGCCGTCGGTTCAGGCTCGGTGCAAGAATTATAGACGACAATGATGGAACGAGAATACTGGAAGCAAAGACTGCGTCATTTGTGGTCAGAGATCACCGTGGAGAATTGTACAAAAAGCACCACCCTCCATTTCTGCAGGATGAAGTATGGAGATTGCAGAAAATTAGCAAGGATGGAGCCTATCATAAGCGCCTGAGCCAAGAAAAAATTGAGACAGTGAAAGATTTCCTTACTCTGCTTTATATACAACCTTCAAGGCTTCGTAATATTCTTGGCCCTGGCATGTCTACGAAAATGTGGGAAACTACAATTGAGCATGCACAGACATGTGTGCTCGATCGGAAGATTTACGTCTACAATCCCCATGATTTGGAACAGAAAAGTGGAGTGGTCTTTAATGTTGTAGGACAAGTGATGGGGCTACTTTCAGATCACCAGTACGTTCCCATAGATAAGCTATCTGAAAGTGAAAAGGCTGATGCTCATAACTTGGTTATCTCTGCGTACAAACATTGGGAAGAAGTCAACTCCATTGATGATGAAACTTCTCTTGTGGGTGGCTCTTCTCACCCACTCAGTTTCCTTTACACCCCCAGCTCACCCATGGAGGACCATTATGGTAGCAAGTACTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTCACACCATCAAATGTCTATTCGTCTGACATAATTTCATCGATGGGTTCTATTGGGAATCCTAGCAGCTTGGACGATCATGCTTTGCAGGGTTTTGATTCTATGGTTGTAAGATATGATCAGATACCAAGTTCCCCAAACTTTGCCAACTCTTCTCTGATCTGCGATTCCGAGCCACTAAACTCATCTTTCTTTGATGTGGATCATACGCAAGTCTTAGAGTCTGATTTGCAATGCAGCTCGATTTTAGAATCACGAGCAATTACAACAACTCTTCAAGGTGGCTCCTCATCATGTGGTGCTCAAATGAGATGGGCTAAATTATATGGTGTGCTAAAATGGTACATTTTGTTGAGGTTGGTAATTAGGAGAAACAAACGCGGGTTCGAGATATACAAAGTTTTGTTCTTCCAAGTGTTTTGGTTATGCTATGTCTCTGAGCCAGAAGATTTTTTTCTCTCTGATTCAAGTGTTTGTACATTGGTGTAG 1830 42.62 MLVFLVHCNLRQYHRIVLYLYVFWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCLWSVVRDATSLQSMQQLLEPVIRKVVREEIESALRKYITNVQRNDENDGKEIYSSGPRCFQLKFITDISLPVFTGARIEGRDGSSLMVALVDTLTGEVVGTGSQSSAKVEIVVLEGDFEGGSDSYTAEEFKNNIVREREGKKPLLTGDTCVSLKDGIGLVGEISFTDNSSWTRSRRFRLGARIIDDNDGTRILEAKTASFVVRDHRGELYKKHHPPFLQDEVWRLQKISKDGAYHKRLSQEKIETVKDFLTLLYIQPSRLRNILGPGMSTKMWETTIEHAQTCVLDRKIYVYNPHDLEQKSGVVFNVVGQVMGLLSDHQYVPIDKLSESEKADAHNLVISAYKHWEEVNSIDDETSLVGGSSHPLSFLYTPSSPMEDHYGSKYLASPKFSGFDFTPSNVYSSDIISSMGSIGNPSSLDDHALQGFDSMVVRYDQIPSSPNFANSSLICDSEPLNSSFFDVDHTQVLESDLQCSSILESRAITTTLQGGSSSCGAQMRWAKLYGVLKWYILLRLVIRRNKRGFEIYKVLFFQVFWLCYVSEPEDFFLSDSSVCTLV 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28333494 28338881 + ClG42_06g0178200.10 Clacu06g1782 252430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1782 609 Pfam Calmodulin binding protein-like N-terminal domain 114 259 IPR046831 -
Clacu06g1782 609 PANTHER OS02G0177800 PROTEIN 51 566 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Clacu06g1782 609 Pfam Calmodulin binding protein C-terminal domain 342 404 IPR046829 -
Clacu06g1782 609 Pfam Calmodulin binding protein central domain 272 337 IPR046830 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1795 Clacu-Chr3:31693884 Clacu06g1782 Clacu-Chr6:28333494 3.00E-54 dispersed
Clacu06g1420 Clacu-Chr6:25081506 Clacu06g1782 Clacu-Chr6:28333494 1.90E-93 dispersed
Clacu06g1782 Clacu-Chr6:28333494 Clacu02g1557 Clacu-Chr2:28951642 2.70E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1782 - - - 0.0