Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1789 ATGATGGATTTGGCTGACAGACAGAGGGCCAAGCGTCACCGGCTGGCCCGAACTGCCCGATCTGCCCGGGACTGCCCGGACTCGGCTCTCTACCAAGTACCAAGTACACATTTCCTTTCTGCCGTCTGGCTTTCTCTTTCTCTTTCTCTTCTCCCACAAACTCACAACCTTCCCCGTTTGGCAGTATTTTGTATTGATCTAGGGTTTCTTAGTAAGCCGATAGCTTTGAATTGGCTTTCCTCTGTCCAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGCTGGAATTGGGGAAAATGCTAGGCTATGCATGGGCGTCGAGATCGTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCGAATTCGTTTTGTAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACGACTGGTAAGGAGAATAAGTTGAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTTGGCAAAGGCATCCTTTTGGAAGCTGCGCCAAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTGAACTTCCATCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACCGATCAGGATTATATTAATGAGCGTCAGGAAGAAGTAGATCAATTGTTGTATAAGACAAGAATAGAAATGCATGCTTCTGTGCAACCCGGTGGTCGATCACCGAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCGGAGATTGCAAAAGTTGCTGAAAAAGGAGGCTTGGTTGATTCTGAAGCTGTGGAGAAATTGGTGCAGCTTATGCTGACAGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCCTCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCCCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCGCAGGATGACAGTGTTACCAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCATCAGCAAGTATTAACTCGAAAGATGGTTCTTCCAGGAATCCGGGTGTTTGTGGCACAACTGATCTTGCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGAGGATCTCGCCAGCGCAAGTCAGTTAATGGGTTTCCTGGTCCTGTTCTCTCTGGTGGTCAACGGGATGTAGGGTCGGGGAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAGTCTGGAATGACTTTTGAAAAGGCATCTGATGGTCCTATTGCTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCGGATAAACATGATCAACTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCGGAGTCCTGGCAGAATAGTGATGTAAAAGATACAGTGATTGGTGCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGATGAGTGCTGTCGGGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCGTCATCATTAGCGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAAGCTAGTATGCCTACCTCACTCACGGATAATGTCGGAATGAATTTACTTGCTAGTGTAGCAGCTGTCGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATGACTGCAGTGGACCGCTCTTCTAGAAGCAGTGATTATAAAGTTAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATGACGTGCCGACGAATGATGCTATGGATGTTACTGAGCAGGGGCTGATCACCAGTTCCTTTGGAGGCAAAAATGTGGATGGAAGGTCTGTTTTGCAATCTGAAGAGAAACCGGTTGGAGATCTGAATGGTCATTCAAAATCTTCTGGTGTAAACTTGCAACAAACTGCTGTGGCGATGGCTGATGGGTGTATGAAAATGAACGAGGTTGGAGGCCCTGCCTCTCCCACTAGGATACCAGAGAAGGGTTTTGAGATCAAGGGGGCTAAACCAGTCAAGGACAGAAAGACGGCTGATGTAGTAGATGGAGAGAGCAGCCCAGAATCGAAACCAAAACCAAGCAGTTCTTTTCCTGATGGTGGCATAGTTGGTGATGGTATCTCGACTCGGGAAGTTGAAATGGATGTTCTTGATGAGCCTTTGCATCGGCGGCAAGACGTTGATGGCAATACCAATAATAGGCTGAATGGTATTAGTACAGCAGATCAAAGGTCATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAACGATGGATTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGCAAATGCAAGTGGAATGAAGGGTGAGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAGACATCAAAGTGATTTGGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGGCTTGTGTTCAGCTACCAACCACGAGGATGAGCATGTGGAGGAGAATTTGGAATCTAAAGAGAATACAGAGAGAAGTGGAGGACAAACACATCAAGGGCAATCTATTATTTCTACTGTCCAAGAAACTGAGCAGCCTAAGCCATCCAAGAGATCCAAATTAGCTGGTGTTGAAGCAGAAGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAACGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTTACACCATCTGGTTGTTTGTCAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGACAAACAACATTCCTGCTTCAATTACAGTTGCAGCTGCGGCAAAAGGAGGTTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACCAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTCTTGCAACCACTCCACTTGCTGATGTTGCAGTCAGTAAAATTTCTCGACCCCCACTGGATATTGACTTGAATGTTCCTGATGAAAGGATTCTTGAGGATATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGGCTAATAATCGTGATCTCGCACATGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGATACTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGGCCACTACTGAACCATCAATATTTCCTCAGCATGCCAGAAGCAGTATGCCATCCCAGGCATCTGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAACAGTCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCGTCTCCGGCAGTGCCGTTTCCTTCTGCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTCCCTCTACCTTCAGCCACGTTTTCAGGTAACACAACAGCATACGTTGATTCATCATCTGGTGGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTCTTAGGTCCTCCTGGTACAGTTTCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCGGTTCGCAGGCCACTGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAGAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTAG 5133 44.67 MMDLADRQRAKRHRLARTARSARDCPDSALYQVPSTHFLSAVWLSLSLSLLPQTHNLPRLAVFCIDLGFLSKPIALNWLSSVQLGLGLMVLVRREGGIEAGIGENARLCMGVEIVEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRIEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKVAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPIAEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSDKHDQLDHSKSDTCQPNITGDVNAESWQNSDVKDTVIGADDGDGSPAAVNGDECCRAAEDVTVSKATPSSLANDHKNGKLHEASFSSINALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNMTAVDRSSRSSDYKVKASCPEEDARDDVPTNDAMDVTEQGLITSSFGGKNVDGRSVLQSEEKPVGDLNGHSKSSGVNLQQTAVAMADGCMKMNEVGGPASPTRIPEKGFEIKGAKPVKDRKTADVVDGESSPESKPKPSSSFPDGGIVGDGISTREVEMDVLDEPLHRRQDVDGNTNNRLNGISTADQRSSSKLNSDSAKLRNDGLLQASGSSSDLVSANASGMKGEKDDETSADVKLERHQSDLDPMPSESRGLGGLCSATNHEDEHVEENLESKENTERSGGQTHQGQSIISTVQETEQPKPSKRSKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLSTVQLISPLPLPVSNVTNNIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVAVSKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKSDLANNRDLAHGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIDTPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPSQASVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSATFQYPVLSFGNSFPLPSATFSGNTTAYVDSSSGGRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVAGSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSW 1710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28392553 28399374 + ClG42_06g0178900.10 Clacu06g1789 252437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1060 1226 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 681 706 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 506 633 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1177 1196 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1623 1678 - -
Clacu06g1789 1710 ProSiteProfiles BAH domain profile. 136 251 IPR001025 GO:0003682(InterPro)
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1119 1142 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 282 311 - -
Clacu06g1789 1710 Pfam TFIIS helical bundle-like domain 450 499 IPR017923 -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1625 1641 - -
Clacu06g1789 1710 SMART BAH_4 136 251 IPR001025 GO:0003682(InterPro)
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 728 756 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1158 1176 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1 20 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 896 926 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 312 329 - -
Clacu06g1789 1710 SMART TFS2_5 422 501 IPR003617 GO:0005634(InterPro)
Clacu06g1789 1710 Pfam BAH domain 138 245 IPR001025 GO:0003682(InterPro)
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 277 329 - -
Clacu06g1789 1710 ProSiteProfiles TFIIS N-terminal domain profile. 416 502 IPR017923 -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 645 664 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1003 1026 - -
Clacu06g1789 1710 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 115 1710 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 505 784 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1197 1211 - -
Clacu06g1789 1710 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 365 503 IPR035441 -
Clacu06g1789 1710 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 404 513 IPR035441 -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 1070 1115 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 768 784 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 904 926 - -
Clacu06g1789 1710 MobiDBLite consensus disorder prediction 989 1046 - -
Clacu06g1789 1710 CDD TFIIS_I 424 500 - -
Clacu06g1789 1710 Gene3D - 123 348 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1789 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0272 Clacu-Chr1:2650786 Clacu06g1789 Clacu-Chr6:28392553 3.80E-22 transposed
Clacu05g1983 Clacu-Chr5:28923763 Clacu06g1789 Clacu-Chr6:28392553 2.10E-14 transposed
Clacu10g1440 Clacu-Chr10:27560901 Clacu06g1789 Clacu-Chr6:28392553 1.70E-269 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47954 PF01426 BAH 1.40E-08 No_clan Clacu TR