Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g1797 | ATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTCCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATCGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTCGTTATGGACCCTTCCGCCATTGCTATGCGCTATATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACACTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTATATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACTCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGCTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTACTAACATGGGCCTTAGTCCCATCCCCTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGCACTTGACAATGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA | 2079 | 44.25 | MHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAALDNDVTSLKMPKLFKPDEPDFSAFQDEN | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28461353 | 28466800 | + | ClG42_06g0179700.10 | Clacu06g1797 | 252445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g1797 | 692 | ProSiteProfiles | Adenosine to inosine editase domain profile. | 33 | 89 | IPR002466 | GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro) | |
Clacu06g1797 | 692 | SUPERFAMILY | cAMP-binding domain-like | 367 | 563 | IPR018490 | - | |
Clacu06g1797 | 692 | FunFam | Cyclic nucleotide-gated ion channel 1 | 436 | 554 | - | - | |
Clacu06g1797 | 692 | SMART | cnmp_10 | 438 | 569 | IPR000595 | - | |
Clacu06g1797 | 692 | Gene3D | Jelly Rolls | 436 | 556 | IPR014710 | - | |
Clacu06g1797 | 692 | SUPERFAMILY | Voltage-gated potassium channels | 31 | 360 | - | - | |
Clacu06g1797 | 692 | MobiDBLite | consensus disorder prediction | 615 | 631 | - | - | |
Clacu06g1797 | 692 | Pfam | Cyclic nucleotide-binding domain | 461 | 550 | IPR000595 | - | |
Clacu06g1797 | 692 | PRINTS | EAG/ELK/ERG potassium channel family signature | 333 | 344 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu06g1797 | 692 | PRINTS | EAG/ELK/ERG potassium channel family signature | 401 | 408 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu06g1797 | 692 | PRINTS | EAG/ELK/ERG potassium channel family signature | 351 | 360 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu06g1797 | 692 | PRINTS | EAG/ELK/ERG potassium channel family signature | 94 | 103 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu06g1797 | 692 | PRINTS | EAG/ELK/ERG potassium channel family signature | 307 | 324 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu06g1797 | 692 | MobiDBLite | consensus disorder prediction | 673 | 692 | - | - | |
Clacu06g1797 | 692 | Pfam | Ion transport protein | 39 | 365 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu06g1797 | 692 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 24 | 663 | - | - | |
Clacu06g1797 | 692 | Gene3D | Helix hairpin bin | 364 | 428 | - | - | |
Clacu06g1797 | 692 | MobiDBLite | consensus disorder prediction | 613 | 635 | - | - | |
Clacu06g1797 | 692 | CDD | CAP_ED | 438 | 569 | IPR000595 | - | |
Clacu06g1797 | 692 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 438 | 568 | IPR000595 | - | |
Clacu06g1797 | 692 | Gene3D | - | 43 | 362 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g1389 | Clacu-Chr6:24806474 | Clacu06g1797 | Clacu-Chr6:28461353 | 2.00E-227 | dispersed | |
Clacu06g1797 | Clacu-Chr6:28461353 | Clacu10g1459 | Clacu-Chr10:27746792 | 1.20E-181 | dispersed | |
Clacu10g1427 | Clacu-Chr10:27418634 | Clacu06g1797 | Clacu-Chr6:28461353 | 6.80E-265 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g1797 | K05391 | - | csv:101209760 | 1251.11 |