Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1797 ATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTCCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATCGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTCGTTATGGACCCTTCCGCCATTGCTATGCGCTATATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACACTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTATATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACTCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGCTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTACTAACATGGGCCTTAGTCCCATCCCCTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGCACTTGACAATGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA 2079 44.25 MHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAALDNDVTSLKMPKLFKPDEPDFSAFQDEN 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28461353 28466800 + ClG42_06g0179700.10 Clacu06g1797 252445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1797 692 ProSiteProfiles Adenosine to inosine editase domain profile. 33 89 IPR002466 GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro)
Clacu06g1797 692 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Clacu06g1797 692 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Clacu06g1797 692 SMART cnmp_10 438 569 IPR000595 -
Clacu06g1797 692 Gene3D Jelly Rolls 436 556 IPR014710 -
Clacu06g1797 692 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Clacu06g1797 692 MobiDBLite consensus disorder prediction 615 631 - -
Clacu06g1797 692 Pfam Cyclic nucleotide-binding domain 461 550 IPR000595 -
Clacu06g1797 692 PRINTS EAG/ELK/ERG potassium channel family signature 333 344 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1797 692 PRINTS EAG/ELK/ERG potassium channel family signature 401 408 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1797 692 PRINTS EAG/ELK/ERG potassium channel family signature 351 360 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1797 692 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1797 692 PRINTS EAG/ELK/ERG potassium channel family signature 307 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1797 692 MobiDBLite consensus disorder prediction 673 692 - -
Clacu06g1797 692 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu06g1797 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 663 - -
Clacu06g1797 692 Gene3D Helix hairpin bin 364 428 - -
Clacu06g1797 692 MobiDBLite consensus disorder prediction 613 635 - -
Clacu06g1797 692 CDD CAP_ED 438 569 IPR000595 -
Clacu06g1797 692 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Clacu06g1797 692 Gene3D - 43 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1389 Clacu-Chr6:24806474 Clacu06g1797 Clacu-Chr6:28461353 2.00E-227 dispersed
Clacu06g1797 Clacu-Chr6:28461353 Clacu10g1459 Clacu-Chr10:27746792 1.20E-181 dispersed
Clacu10g1427 Clacu-Chr10:27418634 Clacu06g1797 Clacu-Chr6:28461353 6.80E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1797 K05391 - csv:101209760 1251.11