Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g1798 | ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACATCTGCTTTGGCAGAGGAGGAACTCATCACTCCTCCTGTTCAGATCAATTACACTCAAAATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGACAAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGTCTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCCGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTCATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTCGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCTGGATCTCGTACTTTTGTTCATGAGCGTGTATACGATGAATTTGTCGAAAAATCAAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGGTCCAAGGGATACTTCATCGAGCCAACAGTTTTCTCAAATGTTAAGGATGATATGTTGATAGCGAAAGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATCGACACAGCCAACATGCTAACACGAGGATTGAGAACGGGAACCGTGTGGCTCAATTGCTTTGACATCTTCGACGCTGCAATACCTTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGCTACTTGCAAGTAAAAGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA | 1653 | 44.34 | MAARRGICSLLSRSLLSSSSASSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEELITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDKGPWPRMTAYERSRILLRCADLIEKHMSELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANMLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL | 550 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 28471426 | 28474598 | + | ClG42_06g0179800.10 | Clacu06g1798 | 252446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g1798 | 550 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 344 | 355 | IPR016160 | GO:0016491(InterPro) | |
| Clacu06g1798 | 550 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 84 | 540 | IPR016162 | GO:0016491(InterPro) | |
| Clacu06g1798 | 550 | SUPERFAMILY | ALDH-like | 66 | 544 | IPR016161 | GO:0016491(InterPro) | |
| Clacu06g1798 | 550 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 74 | 342 | - | - | |
| Clacu06g1798 | 550 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 322 | 511 | IPR016163 | GO:0016620(InterPro) | |
| Clacu06g1798 | 550 | FunFam | Mitochondrial aldehyde dehydrogenase 2 | 322 | 511 | - | - | |
| Clacu06g1798 | 550 | CDD | ALDH_F2BC | 67 | 542 | - | - | |
| Clacu06g1798 | 550 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 60 | 542 | - | GO:0004029(PANTHER) | |
| Clacu06g1798 | 550 | FunFam | Aldehyde dehydrogenase, putative | 512 | 538 | - | - | |
| Clacu06g1798 | 550 | Pfam | Aldehyde dehydrogenase family | 78 | 540 | IPR015590 | GO:0016491(InterPro) | |
| Clacu06g1798 | 550 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 316 | 323 | IPR029510 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1708 | Clacu-Chr2:30583503 | Clacu06g1798 | Clacu-Chr6:28471426 | 8.10E-247 | dispersed | |
| Clacu02g1921 | Clacu-Chr2:32756565 | Clacu06g1798 | Clacu-Chr6:28471426 | 7.70E-72 | dispersed | |
| Clacu06g1094 | Clacu-Chr6:20434724 | Clacu06g1798 | Clacu-Chr6:28471426 | 1.10E-160 | dispersed | |
| Clacu06g1775 | Clacu-Chr6:28284469 | Clacu06g1798 | Clacu-Chr6:28471426 | 1.90E-96 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g1798 | K00128 | - | csv:101209430 | 1003.43 |