Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1802 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGGCTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCTGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCGTGAGACCCATGTCTTTGAATCTCAGTACTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCGATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGTGATTGGTCTGGTTTGTATGCTTCCAATTTTGGCCACAACATCTCCAAGGAGCCCCACCATATGAAACCATAA 1401 46.54 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPVRPMSLNLSTRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMCDWSGLYASNFGHNISKEPHHMKP 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28499200 28504790 + ClG42_06g0180200.10 Clacu06g1802 252450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1802 466 SUPERFAMILY RING/U-box 217 284 - -
Clacu06g1802 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Clacu06g1802 466 MobiDBLite consensus disorder prediction 336 358 - -
Clacu06g1802 466 Pfam Ring finger domain 234 276 IPR001841 -
Clacu06g1802 466 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Clacu06g1802 466 SMART ring_2 235 275 IPR001841 -
Clacu06g1802 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Clacu06g1802 466 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1802 K16284 - - csv:101208939 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1802 Clacu-Chr6:28499200 Clacu10g0669 Clacu-Chr10:9378705 3.60E-09 dispersed
Clacu01g1360 Clacu-Chr1:24895847 Clacu06g1802 Clacu-Chr6:28499200 1.40E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0604 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Clacu11g0961 . 26 600 C3H Transcription Factor Family AT2G31510 56.5 7.6e-175 610.5
Clacu08g0604 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Clacu08g0604 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Clacu01g1573 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Clacu01g1573 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Clacu11g0643 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Clacu06g1154 . 31 335 C3H Transcription Factor Family AT1G11020 75.3 5.0e-135 477.6
Clacu07g1477 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Clacu04g0228 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 6.1e-121 431.0
Clacu10g0923 . 26 456 C3H Transcription Factor Family AT3G16090 71.3 5.0e-166 581.3
Clacu08g0404 . 31 178 C3H Transcription Factor Family AT1G22510 66.2 2.6e-52 202.2
Clacu11g0643 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.4e-73 271.9
Clacu08g1698 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.2e-79 293.1
Clacu01g1687 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.0e-69 259.2
Clacu08g0404 . 35 178 C3H Transcription Factor Family AT1G72175 68.1 2.4e-50 195.3
Clacu01g1977 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 5.7e-159 557.4
Clacu08g1228 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Clacu06g1605 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.7e-179 624.0
Clacu01g0600 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Clacu08g0604 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Clacu08g0604 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Clacu07g0057 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 8.9e-82 300.8
Clacu09g2171 . 99 331 C3H Transcription Factor Family AT5G55970 67.8 4.8e-93 338.2
Clacu04g0228 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 7.8e-116 414.1
Clacu10g1745 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 9.7e-105 377.5
Clacu09g2171 . 512 809 C3H Transcription Factor Family AT4G26580 62.0 1.5e-110 396.4
Clacu04g0666 . 28 492 C3H Transcription Factor Family AT5G01960 68.5 2.3e-167 585.5
Clacu07g0546 . 1 483 C3H Transcription Factor Family AT5G01960 58.1 1.1e-150 530.0
Clacu02g1123 . 19 170 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Clacu02g2334 . 1 242 C3H Transcription Factor Family AT5G19430 52.8 1.2e-62 236.9
Clacu07g1118 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.6e-104 375.6
Clacu02g2334 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 1.2e-57 220.3
Clacu06g1495 . 124 416 C3H Transcription Factor Family AT5G05810 52.8 3.7e-74 275.8
Clacu10g2134 . 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.1e-45 178.7
Clacu11g0794 . 53 205 C3H Transcription Factor Family AT5G05830 58.2 2.0e-44 176.0
Clacu11g0643 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Clacu11g0827 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Clacu09g0665 . 27 358 C3H Transcription Factor Family AT1G63900 62.2 1.2e-108 389.8
Clacu05g0313 . 40 422 C3H Transcription Factor Family AT2G44580 53.7 3.2e-120 428.7
Clacu08g1698 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.0e-41 163.3
Clacu05g1750 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 8.4e-111 397.1
Clacu10g0923 . 144 444 C3H Transcription Factor Family AT1G65040 68.0 1.5e-107 386.3
Clacu01g1687 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.0e-73 273.5
Clacu08g1698 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.9e-70 260.8
Clacu10g1618 . 1 317 C3H Transcription Factor Family AT3G10810 53.6 1.7e-81 300.4
Clacu01g0247 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.9e-45 179.1
Clacu01g0658 . 18 353 C3H Transcription Factor Family AT1G68070 64.1 6.0e-118 421.0
Clacu05g0207 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Clacu10g0346 . 47 368 C3H Transcription Factor Family AT1G68070 50.2 3.1e-82 302.4
Clacu11g2071 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Clacu10g0012 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Clacu08g1443 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 9.9e-112 400.6
Clacu10g0012 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.1e-39 157.9
Clacu08g0604 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Clacu11g0961 . 26 600 C3H Transcription Factor Family AT2G31510 56.5 7.6e-175 610.5
Clacu01g1573 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Clacu10g1799 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Clacu04g0147 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Clacu05g1054 . 633 890 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Clacu02g2427 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Clacu01g0774 . 63 320 C3H Transcription Factor Family AT2G41980 78.7 4.5e-125 444.5
Clacu06g0130 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.4e-123 436.8
Clacu05g2878 . 221 469 C3H Transcription Factor Family AT2G41980 79.1 1.1e-120 429.9
Clacu05g0630 . 119 392 C3H Transcription Factor Family AT3G06140 63.3 4.4e-95 345.1
Clacu10g2007 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.3e-85 313.5
Clacu06g1802 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.6e-127 452.6
Clacu01g1360 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Clacu11g2071 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Clacu10g0012 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Clacu09g1824 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.0e-84 309.3
Clacu10g0044 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.1e-75 278.5
Clacu10g2043 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.1e-68 254.6
Clacu06g1605 . 34 489 C3H Transcription Factor Family AT1G73950 72.4 2.2e-194 675.2
Clacu08g0177 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Clacu01g0658 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.1e-74 274.6
Clacu10g0346 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61