Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1802 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGGCTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCTGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCGTGAGACCCATGTCTTTGAATCTCAGTACTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCGATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGTGATTGGTCTGGTTTGTATGCTTCCAATTTTGGCCACAACATCTCCAAGGAGCCCCACCATATGAAACCATAA 1401 46.54 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPVRPMSLNLSTRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMCDWSGLYASNFGHNISKEPHHMKP 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28499200 28504790 + ClG42_06g0180200.10 Clacu06g1802 252450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1802 466 SUPERFAMILY RING/U-box 217 284 - -
Clacu06g1802 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Clacu06g1802 466 MobiDBLite consensus disorder prediction 336 358 - -
Clacu06g1802 466 Pfam Ring finger domain 234 276 IPR001841 -
Clacu06g1802 466 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Clacu06g1802 466 SMART ring_2 235 275 IPR001841 -
Clacu06g1802 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Clacu06g1802 466 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1802 Clacu-Chr6:28499200 Clacu10g0669 Clacu-Chr10:9378705 3.60E-09 dispersed
Clacu01g1360 Clacu-Chr1:24895847 Clacu06g1802 Clacu-Chr6:28499200 1.40E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1802 K16284 - csv:101208939 737.258